BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918350
Length=1329
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65510.1 | Symbols: AIL7 | AINTEGUMENTA-like 7 | chr5:261858... 1914 0.0
AT5G10510.3 | Symbols: AIL6 | AINTEGUMENTA-like 6 | chr5:331552... 405 5e-112
> AT5G65510.1 | Symbols: AIL7 | AINTEGUMENTA-like 7 | chr5:26185829-26189413
FORWARD LENGTH=1497
Length=1497
Score = 1914 bits (1036), Expect = 0.0
Identities = 1243/1339 (93%), Gaps = 30/1339 (2%)
Strand=Plus/Plus
Query 1 ATGGCGGATTCAACAA-CTCTATCCACTTTTTTCGATTCGCAAATCCATTCTCAGGCTCA 59
|||||||||||||||| || |||| || |||| |||| || ||||||||| ||||
Sbjct 175 ATGGCGGATTCAACAACCT-TATCTAC--TTTT---TTCG---AT-CATTCTCAGACTCA 224
Query 60 GATTCCAAAGCTCGAAGATTTTCTCGGTGATTCCTTCGTTCGTTACTCTGATAACCAAAC 119
|||||||||||| |||||||| |||||||||||||| || ||||||||||||||||||||
Sbjct 225 GATTCCAAAGCTGGAAGATTTCCTCGGTGATTCCTTTGTCCGTTACTCTGATAACCAAAC 284
Query 120 AGAGACACAAGACTCTTCTTCTCTCACTCGATTCTACGATCTACGTCACCACACCGATGC 179
|||||| |||||||||||||||||||||| ||||||||||| |||||||| ||||| |||
Sbjct 285 AGAGACCCAAGACTCTTCTTCTCTCACTCCATTCTACGATCCACGTCACCGCACCGTTGC 344
Query 180 CGGAGGAGTTTCAGAGTTCTTCTCCGATCATCATCAGCAGCACGATTTCAAGACGATAAA 239
|| ||||||| ||| ||||||||| ||||||||||||| || |||||||||||||||||
Sbjct 345 CGAAGGAGTTACAGGGTTCTTCTCTGATCATCATCAGC--CA-GATTTCAAGACGATAAA 401
Query 240 CTCGGGATCAGAAAT-TGTCGATGACTCCACAGCTTCCAACATCGGTGGTACTCATCTTT 298
||||||| ||||||| | |||||||||| ||| ||||||||||||||||||||||||| |
Sbjct 402 CTCGGGACCAGAAATCT-TCGATGACTCAACAACTTCCAACATCGGTGGTACTCATCTCT 460
Query 299 CTAGTCACGTGGTGGAGTCATCAACGACGGCAG-AGTTAGGGTTTAACGGTGGTTG---C 354
| ||||||||||||||||||||||||||||| | |||||||||||||||||| ||| |
Sbjct 461 CCAGTCACGTGGTGGAGTCATCAACGACGGC-GAAGTTAGGGTTTAACGGTGATTGCACC 519
Query 355 ACCACCGGAGGAGCTTTGTCTCTAGGGGTTAACAACACATCAGATCAACATTTAATAAGC 414
||||||||||||| ||||||||||||||||||||||||||||||||||| || | |||
Sbjct 520 ACCACCGGAGGAGTTTTGTCTCTAGGGGTTAACAACACATCAGATCAAC-CTT--TGAGC 576
Query 415 TGTAATAATGGCGAGAGAGGTGAAAACAGCAACAAGAAGAAGACAGTGTCTAAGAAGGAA 474
||||| |||||||||||||||| |||||| ||||||||||| ||||| ||||||||||||
Sbjct 577 TGTAACAATGGCGAGAGAGGTGGAAACAGTAACAAGAAGAAAACAGTTTCTAAGAAGGAA 636
Query 475 ACATCGGATGATTCAAAGAAGAAGACTGTCGAAACATTGGGACAAAGAACTTCGGTTTAT 534
||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 637 ACATCAGATGATTCAAAGAAGAAGATTGTCGAAACATTGGGACAAAGAACTTCAATTTAT 696
Query 535 CGTGGAGTCACCCGACATAGGTGGACTGGAAGATATGAAGCACATCTATGGGACAACAGC 594
|||||||||||||||||||| |||||||||||||| ||||| ||||||||||| ||||||
Sbjct 697 CGTGGAGTCACCCGACATAGATGGACTGGAAGATACGAAGCGCATCTATGGGATAACAGC 756
Query 595 TGTAGGAGGGAAGGTCATGCCAGAAAAGGACGTCAAGTGTACTTAGGTGGATATGACAAG 654
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 757 TGTAGGAGGGAAGGTCAAGCCAGAAAAGGACGTCAAGTGTACTTAGGTGGATATGACAAG 816
Query 655 GAAGATAGAGCAGCTAGAGCCTATGACTTGGCAGCTTTAAAATACTGGGGTCCTACTGCT 714
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 817 GAAGATAGAGCAGCTAGAGCCTATGACTTGGCAGCTTTAAAATACTGGGGTTCTACTGCT 876
Query 715 ACTACAAATTTTCCGGTCGCGAGTTATTCAAAAGAACTTGAGGAAATGAATCACATGACC 774
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 877 ACTACAAATTTTCCGGTCTCGAGTTATTCAAAAGAACTTGAGGAAATGAATCACATGACC 936
Query 775 AAGCTAGAGTTTATTGCATCTCTTAGGAGGAAAAGTAGCGGTTTTTCGAGAGGAGCTTCT 834
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 937 AAGCAAGAGTTTATTGCATCTCTTAGGAGGAAAAGTAGCGGTTTTTCGAGAGGAGCTTCA 996
Query 835 ATGTATAGAGGTGTGACAAGGCATCACCAACAAGGTCGTTGGCAAGCAAGAATCGGCCGT 894
|| ||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 997 ATATATAGAGGTGTCACAAGGCATCATCAACAAGGTCGCTGGCAAGCAAGAATCGGCCGT 1056
Query 895 GTCGCAGGAAACAAAGATCTTTACCTCGGAACCTTTGCAACGGAAGAGGAAGCAGCAGAG 954
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1057 GTCGCAGGAAACAAAGATCTTTACCTCGGAACCTTTGCAACCGAAGAGGAAGCAGCAGAG 1116
Query 955 GCTTATGACATTGCAGCCATAAAGTTCAGAGGAATCAACGCAGTAACTAACTTTGAAATG 1014
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1117 GCTTATGACATTGCAGCCATAAAGTTCAGAGGAATCAACGCAGTAACTAACTTTGAGATG 1176
Query 1015 AACCGGTATGACGTGGAAGCTGTCATGAAAAGTTCTTTCCCTGTAGGAGGAGCAGCTGCG 1074
||| |||||||| | |||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1177 AACAGGTATGACATTGAAGCTGTCATGAATAGTTCTTTACCTGTAGGAGGAGCAGCTGCG 1236
Query 1075 AAACGCCACAAACTC----TC--TCTTGAATCTCCTTCTTCATCATCCTCCGACCATAAC 1128
||||||||||||||| || ||||||||||||||||||||||||||| |||||||||
Sbjct 1237 AAACGCCACAAACTCAAACTCGCTCTTGAATCTCCTTCTTCATCATCCTCTGACCATAAC 1296
Query 1129 ATCCAACAACAACATTTGGTTCCGTCCTCTTCTTCCTCGGATCACAACCCTAACTCAATC 1188
||||||||||||| ||| |||||||||||||| |||||||||| |||||||||||||||
Sbjct 1297 CTCCAACAACAACAGTTGCTTCCGTCCTCTTCTCCCTCGGATCAAAACCCTAACTCAATC 1356
Query 1189 CCATGTGGCATTCCATTTGAATCTTCAGTTCTCTATCACCACCAGAACTTCTTCCAGCAT 1248
|||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||
Sbjct 1357 CCATGTGGCATTCCATTTGAGCCTTCAGTTCTCTATTACCACCAGAACTTCTTTCAGCAT 1416
Query 1249 TATCCTTTGGTTTCTGACTCTACAGTTCAAGTTCCTATGAACCAAGCTGAGTTTTTCTTG 1308
||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 1417 TATCCTTTGGTCTCTGACTCTACAATTCAAGCTCCTATGAACCAAGCTGAGTTTTTCTTG 1476
Query 1309 TGGCCTAACCAGTCTTACT 1327
|||||||||||||||||||
Sbjct 1477 TGGCCTAACCAGTCTTACT 1495
> AT5G10510.3 | Symbols: AIL6 | AINTEGUMENTA-like 6 | chr5:3315529-3320202
FORWARD LENGTH=2471
Length=2471
Score = 405 bits (219), Expect = 5e-112
Identities = 393/477 (82%), Gaps = 11/477 (2%)
Strand=Plus/Plus
Query 641 GTGGATATGACAAGGAAGAT-AGAGCAGCTAGAGCCTATGACTTGGCAGCTTTAAAATAC 699
||||||||||||| |||||| || |||||| |||| || || || |||||| | ||||||
Sbjct 1436 GTGGATATGACAAAGAAGATAAG-GCAGCTCGAGCTTACGATTTAGCAGCTCTGAAATAC 1494
Query 700 TGGGGTCCTACTGCTACTACAAATTTTCCGGTCGCGAGTTATTCAAAAGAACTTGAGGAA 759
||| | |||||||||| || ||||| || | ||| ||| || |||||| | ||||||
Sbjct 1495 TGGAATGCTACTGCTACCACCAATTTCCCTATTACGAATTACTCGAAAGAAGTGGAGGAA 1554
Query 760 ATGAATCACATGACCAAGCTAGAGTTTATTGCATCTCTTAGGAGGAAAAGTAGCGGTTTT 819
||||| ||||||||||||| |||||| ||||| || || |||||||| |||||||||||
Sbjct 1555 ATGAAGCACATGACCAAGCAAGAGTTCATTGCCTCCCTCAGGAGGAAGAGTAGCGGTTTC 1614
Query 820 TCGAGAGGAGCTTCTATGTATAGAGGTGTGACAAGGCATCACCAACAAGGTCGTTGGCAA 879
|| ||||||||||| || || ||||||| ||||||||||| |||||||| |||||||||
Sbjct 1615 TCTAGAGGAGCTTCGATATACCGAGGTGTTACAAGGCATCATCAACAAGGACGTTGGCAA 1674
Query 880 GCAAGAATCGGCCGTGTCGCAGGAAACAAAGATCTTTACCTCGGAACCTTTGCAACGGAA 939
||||| || ||||| || || || ||||||||||||||||| ||||||||||||||||||
Sbjct 1675 GCAAGGATTGGCCGAGTTGCTGGGAACAAAGATCTTTACCTTGGAACCTTTGCAACGGAA 1734
Query 940 GAGGAAGCAGCAGAGGCTTATGACATTGCAGCCAT-AAAGTTCAGAGGAATCAACGCAGT 998
||||||||||| || || |||||||| ||||| || ||| ||||||||||| ||||| ||
Sbjct 1735 GAGGAAGCAGCTGAAGCGTATGACATAGCAGCAATCAAA-TTCAGAGGAATAAACGCTGT 1793
Query 999 AACTAACTTTGAAATGAACCGGTATGACGTGGAAGCTGTCATGAAAAGTTCT-TTCCCTG 1057
|||||||||||| |||||||| || ||||| ||||| ||||||| ||| | |||||
Sbjct 1794 AACTAACTTTGAGATGAACCGTTACGACGTTGAAGCCATCATGAAGAGTGCACTTCCCA- 1852
Query 1058 TAGGAGGAGCAGCTGCGAAACGCCACAAACTCTCTCTTG-AATCTCCTTCTTCATCA 1113
| || || |||||| ||||| | || |||||| ||| || || || ||||||||
Sbjct 1853 TCGGTGGTGCAGCT---AAACGTCTTAAGCTCTCT-TTGGAAGCTGCTGCTTCATCA 1905
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65411310135
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5