BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918359
Length=2070
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65600.1 | Symbols: | Concanavalin A-like lectin protein ki... 3046 0.0
AT5G54064.2 | Symbols: | pseudogene, similar to putative recep... 446 5e-124
> AT5G65600.1 | Symbols: | Concanavalin A-like lectin protein
kinase family protein | chr5:26216126-26218153 REVERSE LENGTH=2028
Length=2028
Score = 3046 bits (1649), Expect = 0.0
Identities = 1906/2031 (94%), Gaps = 14/2031 (1%)
Strand=Plus/Plus
Query 50 TGCTTTATTTTGTTTTCTGTCAAAAtctttgttcttcctcctctatgtctaatccattct 109
|||||||||| |||||||||||||||||| |||||||||||||||||||||| || |||
Sbjct 2 TGCTTTATTTCATTTTCTGTCAAAATCTTTCTTCTTCCTCCTCTATGTCTAATTCAATCT 61
Query 110 tcttccttt-cctttgtcctcctccttccttttGTTGTTGATTCACTTTACTTCAATTTT 168
| ||||||| ||||| ||||| |||| ||||||||||||||||||||||||||||| |||
Sbjct 62 TGTTCCTTTCCCTTT-TCCTCTTCCTCCCTTTTGTTGTTGATTCACTTTACTTCAACTTT 120
Query 169 ACTAGTTTTCGGGC-AGGTGATCCCGAGAACATAGTATACCATGGGGATGCAACGCCTGA 227
|| ||||||| | | ||||||||||| | ||||| | ||||| ||||||||||| || ||
Sbjct 121 ACAAGTTTTC-GACAAGGTGATCCCGGGGACATATTTTACCACGGGGATGCAACTCCCGA 179
Query 228 TGAAGATGGAACGGTGAACTTCAACAACGCTGAACAAACATCTCAGGTTGGTTGGATTAC 287
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TGAAGATGGAACAGTGAACTTCAACAACGCTGAACAAACATCTCAGGTTGGTTGGATTAC 239
Query 288 TTATTCCAAGAAGGTGCCTATATGGAGTCATAGGACTGGTAAGGCTTCAAATTTTAACAC 347
|||||| ||||||||||||||||||||||||| ||||||||||||||| |||| | |||
Sbjct 240 TTATTCAAAGAAGGTGCCTATATGGAGTCATAAAACTGGTAAGGCTTCAGATTTCAGCAC 299
Query 348 CAGTTTCTCCTTCAAAATCGATGCTCGTAACCTTTCAGCAGATGGTCATGGAATCTGTTT 407
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 300 CAGTTTCTCCTTCAAAATCGATGCTCGTAATCTTTCAGCAGATGGTCATGGAATCTGTTT 359
Query 408 CTTTCTTGCTCCTATGGGAGCTCAACTACCTGCATACTCAGTTGGTGGTTTCTTGAATTT 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CTTTCTTGCTCCTATGGGAGCTCAACTACCTGCATACTCAGTTGGTGGTTTCTTGAATTT 419
Query 468 GTTCACTCGAAAGAATAATTACTCGTCTTCGTTTCCGCTTGTTCATGTCGAATTTGACAC 527
||||||||| |||||||||||||| |||||||||||||| |||||||| |||||||||||
Sbjct 420 GTTCACTCGGAAGAATAATTACTCATCTTCGTTTCCGCTAGTTCATGTTGAATTTGACAC 479
Query 528 ATTCAACAATCCAGGATGGGATCCTAAGGATGTTGGATCTCATGTCGGGATCAATAACAA 587
|| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 480 GTTTAACAATCCAGGATGGGATCCTAATGATGTTGGATCTCATGTTGGGATCAATAACAA 539
Query 588 CTCTCTTGTTTCTTCCAACTACACTTCTTGGAATGCAAGCTCACACAACCAAGATATTGG 647
|||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |
Sbjct 540 CTCTCTTGTTTCTTCCAACTACACTTCTTGGAATGCAAGCTCTCACAGCCAAGATATTTG 599
Query 648 TCATGCAAAGATCTCTTATGATTCTGTGACTAAGAATTTAAGTGTGACTTGGGCTTATGA 707
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 600 TCATGCAAAGATCTCTTATGATTCCGTGACCAAGAATTTAAGTGTGACTTGGGCTTATGA 659
Query 708 GCTAACA--A-CCTCTGATCCTAAGGAAAGTTCAAGCCTTTCTTACATCATCGACCTCAC 764
||||||| | |||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 660 GCTAACAGCAACCTCTGATCCTAAGGAGAGTTCAAGCCTTTCTTACATCATCGACCTCGC 719
Query 765 AAAGGTTCTGCCATCAGAAGTTATGTTCGGGTTTATAGCTGCTGCTGGAACAAACACAGA 824
||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||
Sbjct 720 TAAGGTTCTGCCATCAGATGTTATGTTCGGGTTTATAGCTGCCGCTGGGACAAACACAGA 779
Query 825 GGAACATAGACTTTTATCATGGGAGCTCAGTTCAAGTTTGGATAGCGAGAAAGTCGATAG 884
|||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||
Sbjct 780 GGAACATAGACTTTTATCATGGGAGCTCAGTTCAAGTTTGGACAGCGACAAAGCCGATAG 839
Query 885 CAAGATAGGATTGGTAGTTGGCATTTCGGTTTCCGGATTTGTTTTTCTGACATTTTTGGT 944
|| ||||||| | ||| |||||||||||| |||||| |||||||||||||| ||| ||||
Sbjct 840 CAGGATAGGACTAGTAATTGGCATTTCGGCTTCCGGGTTTGTTTTTCTGACGTTTATGGT 899
Query 945 TTTCACAATCGTGGTGGTTTGGTCGCGGAAGCAAAGAAAGAAGAAAGACAGAGATATAGC 1004
|||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 900 CATCACAACCGTGGTGGTTTGGTCACGGAAGCAAAGAAAGAAGAAAGAAAGAGATATAGA 959
Query 1005 AAACATGACATC-ATTAAACGAAGACCTTGAAAGGGAAGCAGGACCAAGAAAGTTCTCTT 1063
|||||||| ||| || |||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 960 AAACATGATATCGAT-AAACAAAGACCTTGAAAGGGAAGCAGGACCAAGAAAGTTTTCTT 1018
Query 1064 ATAAGGATCTTGTGTCAGCAACCAACAGATTCTCAAGCCATAGAAAGCTAGGTGAAGGAG 1123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 ATAAGGATCTTGTGTCAGCAACCAACAGATTCTCAAGCCATAGAAAGCTAGGTGAAGGAG 1078
Query 1124 GGTTCGGAGCGGTTTATGAAGGAAACTTGAAAGAAATCAATACAATGGTTGCGGTGAAGA 1183
| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 GATTTGGAGCAGTTTATGAAGGAAACTTGAAAGAAATCAATACAATGGTTGCGGTGAAGA 1138
Query 1184 AATTATCCGGTGATTCAAGGCAGGGAAAGAAAGAGTTTTTAAATGAAGTTAAGATCATCA 1243
|| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1139 AACTATCCGGTGATTCAAGGCAGGGAAAGAACGAGTTTTTAAACGAAGTTAAGATCATCA 1198
Query 1244 GCAAACTAAGACATCGAAACCTCGTGCAACTCATTGGTTGGTGTAATGaaaaaaaCGAGT 1303
||||||| |||||||||||||||||||| ||||| |||||||||||||| ||||| ||||
Sbjct 1199 GCAAACTGAGACATCGAAACCTCGTGCAGCTCATCGGTTGGTGTAATGAGAAAAATGAGT 1258
Query 1304 TCTTGCTGATATATGAGTTAGTGCCAAATGGTAGCTTGAACTCTCACCTCTTTGGCAAAA 1363
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1259 TCTTGCTGATATATGAGTTAGTTCCAAATGGTAGCTTGAACTCTCACCTCTTTGGGAAAA 1318
Query 1364 GACCTCA-TTTACTTTCTTGGGAGATAAGGTACAAGATAGCTCTTGGTTTAGCCTCTGCT 1422
|||| || ||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 1319 GACC-CAATTTACTTTCTTGGGACATAAGGTACAAGATAGGTCTTGGTTTAGCCTCTGCT 1377
Query 1423 CTGCTTTATCTTCATGAAGAATGGGATCAATGTGTACTGCACAGAGACATCAAAGCAAGC 1482
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1378 CTGCTTTATCTTCATGAAGAATGGGATCAATGTGTACTGCACAGAGACATCAAGGCAAGT 1437
Query 1483 AATATAATGCTTGACAGTGACTTCAATGTAAAGTTAGGTGATTTCGGGTTGGCTCGGCTT 1542
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1438 AATATAATGCTTGACAGTGAATTCAATGTAAAGTTAGGTGATTTCGGGTTGGCTCGGCTA 1497
Query 1543 ATGAACCATGAACATGGTTCCCATACAACAGGATTGGCTGGAACTTTTGGGTACATGGCA 1602
||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1498 ATGAACCATGAACTTGGTTCCCATACAACGGGGTTGGCTGGAACTTTTGGGTACATGGCA 1557
Query 1603 CCTGAATATGTAATGAAAGGAAGTGCGAGTAAAGAGTCTGATATATATAGCTTTGGAATT 1662
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1558 CCTGAATATGTAATGAAAGGAAGTGCGAGTAAAGAATCTGATATATATAGCTTTGGAATT 1617
Query 1663 GTTTTACTAGAGATTGTCACAGGGAGAAAATCGTTGGAACGGACGCAAGAAGATAACAGT 1722
||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||
Sbjct 1618 GTTTTACTAGAGATTGTCACAGGGAGAAAATCGCTGGAACGTACACAAGAAGATAACAGT 1677
Query 1723 GATTCAGAGAGTGATGA-GA-A-GAGTCTTGTGGAGAAAGTTTGGGAACTTTATGGAAAA 1779
||| ||||||||||||| || | |||||| ||||||||||||||||| ||||||||||||
Sbjct 1678 GATACAGAGAGTGATGATGAGAAGAGTCTAGTGGAGAAAGTTTGGGAGCTTTATGGAAAA 1737
Query 1780 CAAGAACTGATGACTTCATGTGTTGATGAGAAATTGGGTAATGAGTTCGATAAGAAAGAA 1839
||||||||||| ||||||||||||||||| ||||||||| | || ||||| |||||||||
Sbjct 1738 CAAGAACTGATCACTTCATGTGTTGATGACAAATTGGGTGAGGATTTCGACAAGAAAGAA 1797
Query 1840 GCTGAGTGTCTTCTGGTTTTAGGGTTATGGTGTGCTCATCCGGATAAAAGCTCGAGACCT 1899
||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 1798 GCTGAATGTCTTCTGGTTTTAGGGTTATGGTGTGCTCATCCTGATAAAAACTCGAGACCT 1857
Query 1900 TCGATAAAACAAGCGATCCAAGTCTTGAAATTTGAGTCACCATTGCCTGATCTTCCATTG 1959
||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 1858 TCGATAAAACAAGGGATCCAAGTCATGAATTTTGAGTCACCATTGCCTGATCTTCCATTG 1917
Query 1960 AAGAGGCCTGTTGCTATGTATTACAACTCGACTACGACTTCTTCTTCTTCTCCCTCGGTT 2019
||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||
Sbjct 1918 AAGAGGCCTGTTGCTATGTATTACATCTCGACTACTACTTCTTCTTCTTCTCCCTCAGTT 1977
Query 2020 AACTCAAATGGTGTTTCGGTAACGTTCTCAGGCATCGAGTATGGTCGTTAA 2070
||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1978 AACTCAAATGGAGTTTCTGTAACGTTCTCAGGCATCGAGTATGGTCGTTAA 2028
> AT5G54064.2 | Symbols: | pseudogene, similar to putative receptor
protein kinase-like protein, blastp match of 39% identity
and 1.2e-53 P-value to GP|15289871|dbj|BAB63567.1||AP003224
putative receptor protein kinase-like protein {Oryza sativa
(japonica cultivar-group)} | chr5:21940180-21941679 FORWARD
LENGTH=1500
Length=1500
Score = 446 bits (241), Expect = 5e-124
Identities = 485/601 (81%), Gaps = 24/601 (4%)
Strand=Plus/Plus
Query 279 TTGGATTACTTATTCCAAGAAGGTGCCTATATGGAGTCATAGGACTGGTAAGGCTTCAAA 338
|||| |||||||| | |||| |||||| | |||| || || ||||||||| || || |
Sbjct 292 TTGGGTTACTTATGCTGAGAAAGTGCCTCTCTGGAATCCTAAAACTGGTAAGCCTACAGA 351
Query 339 TTTTAACACCAGTTTCTCCTTCAAAATCGATGCTCGTAACCTTTCAGCA-GATGGTCATG 397
||||| |||||||||||||| || || ||| | |||||||||| || | | |||||||
Sbjct 352 TTTTAGTACCAGTTTCTCCTTTAAGATTGATACCCGTAACCTTT-AGAATTACGGTCATG 410
Query 398 GAATCTGTTTCTTTCTTGCTCCTATG-GGAGCTCAACTACCTG-CATACTCAGTTGGTGG 455
| ||||| ||||||||||||||| || ||| |||||| |||| | |||||| |||||
Sbjct 411 GGATCTGCTTCTTTCTTGCTCCTTTGCGGA-TTCAACTTCCTGTGA-ACTCAGCTGGTGA 468
Query 456 TTTCTTGAAT-TTGTTCACTCGAA-AGAATAATTACTCGTCTTCGTTTCCGCTTGTTCAT 513
||||||| | || || |||||| | | | ||| | |||||||||||||| ||||||
Sbjct 469 TTTCTTGGGTCTTTTTTTCTCGAATCG-AGAGCTACGCATCTTCGTTTCCGCTGGTTCAT 527
Query 514 GTCGAATTTGACACATTCAACAATCC-AGGATGGGATCCTAAGGA-TGTTGGATCTCATG 571
|||| |||||| ||||||| || || || |||||||||| | | ||||||||||||||
Sbjct 528 ATCGAGTTTGACTCATTCAATAA-CCAAGAATGGGATCCT-ACCACTGTTGGATCTCATG 585
Query 572 TCGGG-ATCAATAACAACTCTCTTGTTTCTTCCAACTACACTTCTTGGAATGCAAGCTCA 630
| ||| |||||||| |||||||||||||| || |||||||||||||||||||||||||||
Sbjct 586 T-GGGAATCAATAATAACTCTCTTGTTTCGTCTAACTACACTTCTTGGAATGCAAGCTCA 644
Query 631 CACAACCAAGATATTGGTCATGCAAAGATCTCTTATGATTCTGTGACTAAGAATTTAAGT 690
|| | ||||||| ||||||||||| | ||||| ||||| ||||| ||||||||||| |||
Sbjct 645 CATATCCAAGATGTTGGTCATGCACATATCTCCTATGACTCTGTTACTAAGAATTTGAGT 704
Query 691 GTGACTTGGGCTTATGAGCTAACAACCTCTGATCCTAAGGAAAGTTCAAGCCTTTCTTAC 750
| | ||||||||||||| |||| | ||||||||| |||| |||| | || |||| ||
Sbjct 705 GCGTCTTGGGCTTATGAATTAAC--C-TCTGATCCTCAGGAGAGTTTAGGCATTTCCTAT 761
Query 751 ATCATCGACCTCACAAAGGTTCTGCCATCAGAAGTTATGTTCGGGTTTAT-AGCTGCTGC 809
||||| || || |||||||| ||||| || | |||| | |||||||| | ||| ||| |
Sbjct 762 ATCATTGATCTTGCAAAGGTTTTGCCACCACATGTTACGGTCGGGTTT-TCAGCCGCTAC 820
Query 810 TGGAACAAACACAGAGGAACATA-GACTTTTATCATGGGAGCTCAGT-TCAAGTTTGGAT 867
|||| | |||||||| ||||| | ||||||||||||||| ||| | ||||||||||||
Sbjct 821 TGGATCGGTCACAGAGGGACATAAG-CTTTTATCATGGGAGTTCA-TCTCAAGTTTGGAT 878
Query 868 A 868
|
Sbjct 879 A 879
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102609913980
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5