BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918394
Length=183
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65880.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 272 7e-73
> AT5G65880.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant
structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast
hits to 1807 proteins in 277 species: Archae - 0; Bacteria
- 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses -
0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:26352995-26353761
FORWARD LENGTH=456
Length=456
Score = 272 bits (147), Expect = 7e-73
Identities = 169/179 (94%), Gaps = 3/179 (2%)
Strand=Plus/Plus
Query 1 ATGTTTCGGAGGAACAGGTTTCTGTCTTTGCCAATGGTGGTCGGAGCAGTTGTGATTGGT 60
|||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 101 ATGTTTCGAAGGAACAGGTTTCTGTCTTTGCCAATGGTGATCGGTGCAGTTGTGATTGGT 160
Query 61 GTGGTTTCAGGGAAAGCGATTTTCGGACCTCCGCTTGATCAGTACTGGAAAGAGAAGCTC 120
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 161 GTGGTTTCAGGGAAAGCTATTTTCGGGCCTCCGCTTGATCAGTACTGGAAAGAGAAGCTC 220
Query 121 GAAGGAGAAGAAGCTGTTGTTGCCAAGGACG---TCATTGAAAAGAGCTCAGATTCATC 176
||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 221 GAACGAGAAGAAGCTGTTGTTGCCAAGGAAGAAGTCATTGAAAAGAGCTCAGATTCATC 279
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 8048216160
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5