BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918479
Length=1632
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66920.1 | Symbols: sks17 | SKU5 similar 17 | chr5:26722823... 2590 0.0
AT2G23630.1 | Symbols: sks16 | SKU5 similar 16 | chr2:10052566... 172 7e-42
AT5G48450.1 | Symbols: sks3 | SKU5 similar 3 | chr5:19632791-1... 76.8 6e-13
> AT5G66920.1 | Symbols: sks17 | SKU5 similar 17 | chr5:26722823-26725626
FORWARD LENGTH=2037
Length=2037
Score = 2590 bits (1402), Expect = 0.0
Identities = 1552/1626 (95%), Gaps = 4/1626 (0%)
Strand=Plus/Plus
Query 9 AAAAACAGCATCCTTGCTTAATCCTCTTCTTCTTCTTGGAGCTTTGACTCTTTTGAGCAG 68
||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 158 AAAAACAACATCCTTGCTTAATCATCTTCTTCTTCTTGGAGCTTTGACTCTTTTGAGCAG 217
Query 69 TTTGTTGATAGTGAAAGGAGAAAGCCCTTACAAGTTTTACACCTGGACTGTAACTTATGG 128
|||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 218 TTTGGTGATAGTGAAAGGAGAAAGCCCTTACAAGTTTTACACTTGGACTGTGACTTATGG 277
Query 129 CATTATCTCTCCTCTTGGTGTTCCTCAACAGGTTATTCTCATCAATGGTCAGTTTCCTGG 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 278 CATTATCTCTCCTCTTGGTGTTCCTCAACAGGTTATTCTCATCAATGGTCAGTTTCCTGG 337
Query 189 TCCAAAGCTTGATGTTGTGACCAATGACAACATCATCCTCAACCTCATCAACAAACTTGA 248
|||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 338 TCCAAAACTTGAAGTTGTGACCAACGACAACATCATCCTCAACCTCATCAACAAACTTGA 397
Query 249 CCAGCCTTTCCTCTTGACCTGGAATGGGATTAAGCAGAGGAAGAACTCATGGCAAGATGG 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 398 CCAGCCTTTCCTCTTGACCTGGAATGGGATTAAGCAGAGGAAGAACTCATGGCAAGATGG 457
Query 309 TGTTTTGGGAACAAACTGTCCGATCCAACCGAACTCAAACTTCACTTACAAATTCCAAAC 368
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 458 TGTTTTGGGAACAAACTGTCCGATCCAACCAAACTCAAACTTCACTTACAAATTCCAAAC 517
Query 369 CAAAGATCAGATTGGAACTTTCCATTACTTCCCTTCCACCGCTTTTCACAAAGCCGCCGG 428
|||||||||||| ||||||||| | |||||||||||||| ||||||||||||||||||||
Sbjct 518 CAAAGATCAGATCGGAACTTTCAACTACTTCCCTTCCACTGCTTTTCACAAAGCCGCCGG 577
Query 429 TGGATTCGGAGCCATCAATGTCTATGCAAGACCTGGAATCCCAATCCCTTACCCTCTCCC 488
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 578 TGGATTCGGAGCCATCAATGTCTACGCAAGACCTGGAATTCCAATCCCTTACCCTCTCCC 637
Query 489 AACCGCAGATTTCACTTTACTCGTTGGTGATTGGTTCAAAACCAACCACAAAACGCTTCA 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 638 AACCGCAGATTTCACTTTACTCGTTGGTGATTGGTTCAAAACCAACCACAAAACGCTTCA 697
Query 549 ACAGCGTTTGGATTCTGGTGGGGTTCTTCCATTTCCCGATGGGATGCTCATAAATGGACA 608
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 698 ACAGCGTTTGGATTCTGGTGGGGTTCTTCCATTTCCCGATGGGATGCTTATAAATGGACA 757
Query 609 AACTCAAACAACATTTTCAGGCGACCAAGGGAAGACTTATATGTTCAGAATCTCTAATGT 668
||| ||| |||| |||||||||||||||||||||||||| ||||| |||||||| |||||
Sbjct 758 AACCCAATCAACGTTTTCAGGCGACCAAGGGAAGACTTACATGTTGAGAATCTCCAATGT 817
Query 669 TGGGTTATCAAGCAGTTTCAATTTCAGAATCCAAGGACATACAATGAAAGTAGTTGAAGT 728
|||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 818 TGGGTTATCAAGCACTTTCAATTTCAGAATCCAAGGCCATACAATGAAAGTAGTTGAAGT 877
Query 729 TGAAGGCTCTCATGTTATTCAAACTGATTATGATTCTCTTGACATTCATGTTGGCCAGTC 788
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 878 TGAAGGCTCTCATGTTATTCAAACTGATTATGATTCTCTTGACATTCACGTTGGCCAGTC 937
Query 789 TTTAGCTGTTCTTGTTACTTTAAACCAATCTCCCAGAGATTATTACATCGTCGCAAGCAC 848
|||||| |||||||||||||||||||||||||| | ||||||||||||||| ||||||||
Sbjct 938 TTTAGCAGTTCTTGTTACTTTAAACCAATCTCCTAAAGATTATTACATCGTTGCAAGCAC 997
Query 849 CCGGTTCGTTAGAAGCAAAG-TTTCTGTTATGGGTTTGTTGCGTTATTCTAACTCCCGCG 907
||||||| | |||||||| | |||||||||||||||||||||||||||||||||| ||||
Sbjct 998 CCGGTTCATAAGAAGCAA-GCTTTCTGTTATGGGTTTGTTGCGTTATTCTAACTCTCGCG 1056
Query 908 TCTCAGCTTCTGGTGATCAGCCTGCTCTTCCACCTGGAGAGCTTGTTTGGTCCATGAGAC 967
|| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1057 TCCCAGCTTCTGGTGATCCTCCCGCTCTTCCACCTGGAGAGCTTGTTTGGTCCATGAGAC 1116
Query 968 AAGCTAGAACATTCAGGTGGAACTTAACAGCAAATGCAGCTAGACCAAACCCTCAAGGAT 1027
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1117 AAGCTAGAACCTTCAGATGGAACTTAACAGCAAATGCAGCTAGACCAAACCCTCAAGGAT 1176
Query 1028 CATTCCACTATGGAATGATCACTCCAACAAAGTCATTTGTCTTCTCAAATTCAGCTCCTT 1087
| ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 1177 CTTTCCACTATGGAATGATCAGTCCAACAAAGACATTTGTCTTCTCAAATTCAGCTCCTT 1236
Query 1088 TAATTAATGGAAAGCAAAGATATGCAGTCAATGGAGTCTCTTATGTGAACTCAGTGACGC 1147
| |||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 1237 TGATTAATGGGAAGCAAAGATATGCAGTCAATGGAGTCTCTTATGTGAAATCAGAGACGC 1296
Query 1148 CTCTTAAACTCGCTGATCACTTTGGAATCAGTGGAGTTTTCAGCACCAACGCCATTCAAA 1207
||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||
Sbjct 1297 CTCTTAAACTCGCTGATCACTTTGGCATCTCAGGAGTTTTCAGCACCAATGCCATTCAAA 1356
Query 1208 GCGTCCCTTCTAACTCTCCTCCAACTGTTGCAACATCAGTTGTTCAAACATCTCTCCATG 1267
||||||| || |||||||| ||||| |||||||||||||||||||||||||||| |||||
Sbjct 1357 GCGTCCCATCAAACTCTCCGCCAACAGTTGCAACATCAGTTGTTCAAACATCTCACCATG 1416
Query 1268 ATTTCCTTGAAATTGTGTTTCAGAACAATGAGAAGTCAATGCAGTCTTGGCATCTTGACG 1327
| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1417 ACTTCCTTGAAATTGTATTTCAGAACAATGAGAAGTCAATGCAGTCTTGGCATCTTGATG 1476
Query 1328 GATATGACTTCTGGGTCGTTGGATTTGGTTCTGGACAATGGACACCTGCAAAAAGATCAC 1387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1477 GATATGACTTCTGGGTCGTTGGATTTGGTTCTGGACAATGGACACCTGCAAAAAGATCAC 1536
Query 1388 T-CTACAATCTTGTTGATGCTCTTACCAGACACACTACTCAGGTGTACCCAGAGTCTTGG 1446
| | ||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||
Sbjct 1537 TTC-ACAATCTTGTTGATGCTCTGACCAGACACACAACTCAGGTCTACCCAGAGTCTTGG 1595
Query 1447 ACAACAATCTTGGTGTCTTTGGACAATCAAGGGATGTGGAATATGAGATCAGCGATATGG 1506
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1596 ACAACAATCTTAGTGTCTTTAGACAATCAAGGGATGTGGAATATGAGATCAGCGATATGG 1655
Query 1507 GAAAGACAATATTCAGGACAACAGTTTTATCTCAAAGTATGGAATCCAGTGCAGAGCCTT 1566
||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||
Sbjct 1656 GAAAGACAATATTCAGGACAACAGTTTTATCTCAAAGTATGGAATTCAGTACAGAGTCTT 1715
Query 1567 GCCAATGAATACAATCCTCCTGACAATCTTCAATTCTGTGGCAAAGCTGTTGGAAGACAC 1626
||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 1716 GCCAATGAATACAATCCTCCTGACAATCTTCAACTCTGTGGCAAAGCTGTTGGACGACAT 1775
Query 1627 CTTTAG 1632
|||||
Sbjct 1776 GTTTAG 1781
> AT2G23630.1 | Symbols: sks16 | SKU5 similar 16 | chr2:10052566-10055317
REVERSE LENGTH=1647
Length=1647
Score = 172 bits (93), Expect = 7e-42
Identities = 188/234 (80%), Gaps = 6/234 (3%)
Strand=Plus/Plus
Query 108 CACCTGGACTGTAACTTATGGCATTATCTCTCCTCTT-GGTGTTCCTCAACAGGTTATTC 166
||| |||||||| |||||||| | | || ||| || ||||||||||||||||||||||
Sbjct 102 CACTTGGACTGTTACTTATGGAACCAGATCGCCT-TTAGGTGTTCCTCAACAGGTTATTC 160
Query 167 TCATCAATGGTCAGTTTCCTGGT-C-CAAAGCTTGATGTTGTGACCAATGACAACATCAT 224
| || ||||| ||||| |||||| | | || |||| | ||| || || | || ||| |
Sbjct 161 TTATTAATGGCCAGTTCCCTGGTCCTCCAA--TTGAAGGTGTAACAAACAATAATATCGT 218
Query 225 CCTCAACCTCATCAACAAACTTGACCAGCCTTTCCTCTTGACCTGGAATGGGATTAAGCA 284
| || |||| ||||| |||||| | ||||||||| | |||||||| || ||||| ||
Sbjct 219 TGTTAATGTCATTAACAAGCTTGACGAACCTTTCCTCATCACCTGGAACGGAATTAAACA 278
Query 285 GAGGAAGAACTCATGGCAAGATGGTGTTTTGGGAACAAACTGTCCGATCCAACC 338
|||||||| || |||||||| ||||||||||||||||||||||||||||||||
Sbjct 279 GAGGAAGATGTCGTGGCAAGACGGTGTTTTGGGAACAAACTGTCCGATCCAACC 332
> AT5G48450.1 | Symbols: sks3 | SKU5 similar 3 | chr5:19632791-19635664
REVERSE LENGTH=1918
Length=1918
Score = 76.8 bits (41), Expect = 6e-13
Identities = 73/88 (83%), Gaps = 4/88 (5%)
Strand=Plus/Plus
Query 244 CTTGACCAGCC-TTTCCTCTTGACCTGGAATGGGAT-TAAGCAGAGGAAGAACTCATGGC 301
||||| |||| || | |||| || |||||||| || || || ||||| ||||||||||
Sbjct 281 CTTGATGAGCCATTGCTTCTT-ACATGGAATGGAATCCAA-CATAGGAAAAACTCATGGC 338
Query 302 AAGATGGTGTTTTGGGAACAAACTGTCC 329
||||||||||||||||||| || |||||
Sbjct 339 AAGATGGTGTTTTGGGAACTAATTGTCC 366
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80622075270
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5