BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918482
Length=1266
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66890.1 | Symbols: | Leucine-rich repeat (LRR) family prot... 1779 0.0
> AT5G66890.1 | Symbols: | Leucine-rich repeat (LRR) family protein
| chr5:26712944-26714383 REVERSE LENGTH=1248
Length=1248
Score = 1779 bits (963), Expect = 0.0
Identities = 1170/1268 (92%), Gaps = 22/1268 (2%)
Strand=Plus/Plus
Query 1 ATGGATTCGAGA-TCGGTCCAAAGCTTTGAAGCCTTGCCCCATAATCTTCGAGAGTGTTT 59
||| |||||| | ||| | ||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1 ATGAATTCGA-ATTCGATTCAAAGCTTTGATGCCTTGCCCCACAATCTTCGAGAGTGTTT 59
Query 60 CTTGGACATGGCCTTATTTCTTGAAGACCAAAGGATAATTGCTT-CATCTATTATTGACT 118
|||||||||||||| |||||||||||||||||||||||| |||| || |||| |||||||
Sbjct 60 CTTGGACATGGCCTCATTTCTTGAAGACCAAAGGATAATAGCTTCCA-CTATAATTGACT 118
Query 119 TATGGTCTGCATTATACGGTAAAGAGAGCTTCATTTGTATGAATTACCTCCAAGATCTTG 178
|||||||||||| ||||||||||||| | |||||||| |||||||||||||||
Sbjct 119 TATGGTCTGCATCATACGGTAAAGAG-G--------GTATGAATAACCTCCAAGATCTTG 169
Query 179 CCTCCCACAATCTCCTTAAACTTCTTCCTCTTGGGAGAAATGAGTATGAAGATGGTTTCT 238
|||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 170 CCTCTCGCAATCTCCTTAAACTTCTTCCTATTGGGAGAAATGAGTATGAAGATGGTTTCT 229
Query 239 ACAGTGAGTTATTGGTTAAACAAGAAAACATCCTTAGAGAATTTGCTATAAATCAATGCG 298
||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 230 ACAATGAGTTATTGGTTAAACAAGACAACGTCCTTAGAGAATTTGCTATAAATCAATGCC 289
Query 299 AAAAAGAGTCGTCTTCGATTTTCGAAAGGAAAAGATTAAACTTGGAGATACAAGAAAACA 358
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 290 TAAAAGAGTCGTCTTCGATTTTCGAAAGGAAAAGATTAAACTTGGAGATACAAGATAACA 349
Query 359 AATTCCCAAACTGGTGTTTAAATCCAAAACAACCTATTGTTATTAATGCATCTCTAATTT 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 350 AATTCCCAAACTGGTGTTTAAATCCAAAACAACCTATTGTTATTAATGCATCTCTCTTTT 409
Query 419 CTATCTCTACCGATGATTCATTTTTATCATCAAGTTGGTTTGAAATGGATTGTCCAAATG 478
|||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 410 CTATCTCTACTGATGATTCATTTG---CATCAAGTTGGTTTGAAATGGATTGTCCAAATG 466
Query 479 TTGAAGCTTTAGTTCTTAATCTCTCTTCATCAAACTATGCATTACCAAACTTCATTGCGA 538
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 467 TTGAAGCTTTAGTTCTTAATATCTCTTCATCAAACTATGCATTACCAAACTTCATTGCTA 526
Query 539 CAATGAAGGAATTGAAGGTTGTGATAATCATAAATCATGGTCTTGATCCTGCAAAGTTAA 598
| ||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||| |
Sbjct 527 CTATGAAGGAATTGAAGGTTGTGATTATCATAAATCACGGTCTTGAGCCTGCAAAGTTGA 586
Query 599 CCAACTTGTCTTGTCTCAGCTCTTTACCAAACCTGAAACGGATCAGATTCGAGAAAGTAT 658
| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 587 CTAACTTGTCTTGTCTCAGCTCGTTACCAAACCTGAAACGGATCAGATTCGAGAAAGTTT 646
Query 659 CAATCATTTTGCTTGACATTCCCAAACTTGGTCTCAAGAGTCTTGAGAAGTTGTCTTTAT 718
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 647 CAATCAGTTTGCTTGACATTCCCAAACTTGGTCTCAAGAGTCTTGAGAAGTTGTCCTTAT 706
Query 719 GGTTGTGTCACTTTGTTGATGTTCTCAACGAATTAGAAGTTAATGATGTTTCTAAAACTT 778
|||| |||||| ||||||||| ||||||||||||||||| | || | || || ||||||
Sbjct 707 GGTTTTGTCACGTTGTTGATGCTCTCAACGAATTAGAAG--A-TG-T-TT-CTGAAACTT 760
Query 779 TACAAAGTCTACAGGAAATCGAAATTGATTATTGCTATAATCTTGATGAATTACCATATT 838
|||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||
Sbjct 761 TACAAAGTCTACAGGAAATCGAGATTGACTATTGCTACAATCTTGATGAATTACCATATT 820
Query 839 GGATCTCTCAAGTTGTTTCATTGAAGAAGCTTAGCGTTACAAATTGTAACAAGCTTTGTA 898
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
Sbjct 821 GGATCTCTCAAGTTGTTTCATTGAAGAAGCTTAGTGTCACAAATTGTAACAAGCTTTGCA 880
Query 899 GACTCATAGAAGCTATAGGTGACTTGAGGAATCTTGAAATGTTGAGACTTAGTTCTTGTA 958
|| |||||||||||||||||||||| ||| | ||||||| | ||||||| |||||||||
Sbjct 881 GAGTCATAGAAGCTATAGGTGACTTAAGGGACCTTGAAACGCTGAGACTGAGTTCTTGTG 940
Query 959 CTAGTCTCTTAGAACTGCCTGAAACGATTGATAGACTCAACAATTTGCGGTTTCTTGATG 1018
||||||||||||| || |||||||||||||| |||||| |||||||||||||||||||||
Sbjct 941 CTAGTCTCTTAGAGCTACCTGAAACGATTGACAGACTCGACAATTTGCGGTTTCTTGATG 1000
Query 1019 TTTCTGGTGGCTTCCAATTGAAAAAACTACCTCTAGATATTGGAAAGCTCGACAAGCTTG 1078
||||||||||||||||| ||||||| || |||||||| |||||||||||| | |||||||
Sbjct 1001 TTTCTGGTGGCTTCCAACTGAAAAACCTGCCTCTAGAAATTGGAAAGCTCAAGAAGCTTG 1060
Query 1079 AGAAAATTTCGATGAAAGATTGTTATCGATGCGAGTTACCGGATTCGGTGAAGAATCTAG 1138
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1061 AGAAGATTTCGATGAAAGATTGTTATCGATGCGAGTTACCGGATTCTGTGAAGAATCTAG 1120
Query 1139 CGAATCTGGAGGTGAAATGCGGCGAAGAGACTGCGTTGTTGTGGAAAAGATTGAAACCAA 1198
||||||||| |||||||||| |||||| |||||||| |||||||||| ||||||||||
Sbjct 1121 AGAATCTGGAAGTGAAATGCGACGAAGATACTGCGTTCTTGTGGAAAATATTGAAACCAG 1180
Query 1199 AAATGAAGAATCTAACGATCACAGAGGAAGAGACAGAACATAACCTCAACTTCCTTCAAC 1258
||||||||||||| ||||||||||||||| | |||||||||||||||||||| |||||||
Sbjct 1181 AAATGAAGAATCTGACGATCACAGAGGAAAAAACAGAACATAACCTCAACTTGCTTCAAC 1240
Query 1259 TGTTTTAA 1266
||||||||
Sbjct 1241 TGTTTTAA 1248
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62248675800
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5