BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg918482 Length=1266 Score E Sequences producing significant alignments: (Bits) Value AT5G66890.1 | Symbols: | Leucine-rich repeat (LRR) family prot... 1779 0.0 > AT5G66890.1 | Symbols: | Leucine-rich repeat (LRR) family protein | chr5:26712944-26714383 REVERSE LENGTH=1248 Length=1248 Score = 1779 bits (963), Expect = 0.0 Identities = 1170/1268 (92%), Gaps = 22/1268 (2%) Strand=Plus/Plus Query 1 ATGGATTCGAGA-TCGGTCCAAAGCTTTGAAGCCTTGCCCCATAATCTTCGAGAGTGTTT 59 ||| |||||| | ||| | ||||||||||| ||||||||||| ||||||||||||||||| Sbjct 1 ATGAATTCGA-ATTCGATTCAAAGCTTTGATGCCTTGCCCCACAATCTTCGAGAGTGTTT 59 Query 60 CTTGGACATGGCCTTATTTCTTGAAGACCAAAGGATAATTGCTT-CATCTATTATTGACT 118 |||||||||||||| |||||||||||||||||||||||| |||| || |||| ||||||| Sbjct 60 CTTGGACATGGCCTCATTTCTTGAAGACCAAAGGATAATAGCTTCCA-CTATAATTGACT 118 Query 119 TATGGTCTGCATTATACGGTAAAGAGAGCTTCATTTGTATGAATTACCTCCAAGATCTTG 178 |||||||||||| ||||||||||||| | |||||||| ||||||||||||||| Sbjct 119 TATGGTCTGCATCATACGGTAAAGAG-G--------GTATGAATAACCTCCAAGATCTTG 169 Query 179 CCTCCCACAATCTCCTTAAACTTCTTCCTCTTGGGAGAAATGAGTATGAAGATGGTTTCT 238 |||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 170 CCTCTCGCAATCTCCTTAAACTTCTTCCTATTGGGAGAAATGAGTATGAAGATGGTTTCT 229 Query 239 ACAGTGAGTTATTGGTTAAACAAGAAAACATCCTTAGAGAATTTGCTATAAATCAATGCG 298 ||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| Sbjct 230 ACAATGAGTTATTGGTTAAACAAGACAACGTCCTTAGAGAATTTGCTATAAATCAATGCC 289 Query 299 AAAAAGAGTCGTCTTCGATTTTCGAAAGGAAAAGATTAAACTTGGAGATACAAGAAAACA 358 |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 290 TAAAAGAGTCGTCTTCGATTTTCGAAAGGAAAAGATTAAACTTGGAGATACAAGATAACA 349 Query 359 AATTCCCAAACTGGTGTTTAAATCCAAAACAACCTATTGTTATTAATGCATCTCTAATTT 418 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 350 AATTCCCAAACTGGTGTTTAAATCCAAAACAACCTATTGTTATTAATGCATCTCTCTTTT 409 Query 419 CTATCTCTACCGATGATTCATTTTTATCATCAAGTTGGTTTGAAATGGATTGTCCAAATG 478 |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 410 CTATCTCTACTGATGATTCATTTG---CATCAAGTTGGTTTGAAATGGATTGTCCAAATG 466 Query 479 TTGAAGCTTTAGTTCTTAATCTCTCTTCATCAAACTATGCATTACCAAACTTCATTGCGA 538 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | Sbjct 467 TTGAAGCTTTAGTTCTTAATATCTCTTCATCAAACTATGCATTACCAAACTTCATTGCTA 526 Query 539 CAATGAAGGAATTGAAGGTTGTGATAATCATAAATCATGGTCTTGATCCTGCAAAGTTAA 598 | ||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||| | Sbjct 527 CTATGAAGGAATTGAAGGTTGTGATTATCATAAATCACGGTCTTGAGCCTGCAAAGTTGA 586 Query 599 CCAACTTGTCTTGTCTCAGCTCTTTACCAAACCTGAAACGGATCAGATTCGAGAAAGTAT 658 | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | Sbjct 587 CTAACTTGTCTTGTCTCAGCTCGTTACCAAACCTGAAACGGATCAGATTCGAGAAAGTTT 646 Query 659 CAATCATTTTGCTTGACATTCCCAAACTTGGTCTCAAGAGTCTTGAGAAGTTGTCTTTAT 718 |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 647 CAATCAGTTTGCTTGACATTCCCAAACTTGGTCTCAAGAGTCTTGAGAAGTTGTCCTTAT 706 Query 719 GGTTGTGTCACTTTGTTGATGTTCTCAACGAATTAGAAGTTAATGATGTTTCTAAAACTT 778 |||| |||||| ||||||||| ||||||||||||||||| | || | || || |||||| Sbjct 707 GGTTTTGTCACGTTGTTGATGCTCTCAACGAATTAGAAG--A-TG-T-TT-CTGAAACTT 760 Query 779 TACAAAGTCTACAGGAAATCGAAATTGATTATTGCTATAATCTTGATGAATTACCATATT 838 |||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||| Sbjct 761 TACAAAGTCTACAGGAAATCGAGATTGACTATTGCTACAATCTTGATGAATTACCATATT 820 Query 839 GGATCTCTCAAGTTGTTTCATTGAAGAAGCTTAGCGTTACAAATTGTAACAAGCTTTGTA 898 |||||||||||||||||||||||||||||||||| || |||||||||||||||||||| | Sbjct 821 GGATCTCTCAAGTTGTTTCATTGAAGAAGCTTAGTGTCACAAATTGTAACAAGCTTTGCA 880 Query 899 GACTCATAGAAGCTATAGGTGACTTGAGGAATCTTGAAATGTTGAGACTTAGTTCTTGTA 958 || |||||||||||||||||||||| ||| | ||||||| | ||||||| ||||||||| Sbjct 881 GAGTCATAGAAGCTATAGGTGACTTAAGGGACCTTGAAACGCTGAGACTGAGTTCTTGTG 940 Query 959 CTAGTCTCTTAGAACTGCCTGAAACGATTGATAGACTCAACAATTTGCGGTTTCTTGATG 1018 ||||||||||||| || |||||||||||||| |||||| ||||||||||||||||||||| Sbjct 941 CTAGTCTCTTAGAGCTACCTGAAACGATTGACAGACTCGACAATTTGCGGTTTCTTGATG 1000 Query 1019 TTTCTGGTGGCTTCCAATTGAAAAAACTACCTCTAGATATTGGAAAGCTCGACAAGCTTG 1078 ||||||||||||||||| ||||||| || |||||||| |||||||||||| | ||||||| Sbjct 1001 TTTCTGGTGGCTTCCAACTGAAAAACCTGCCTCTAGAAATTGGAAAGCTCAAGAAGCTTG 1060 Query 1079 AGAAAATTTCGATGAAAGATTGTTATCGATGCGAGTTACCGGATTCGGTGAAGAATCTAG 1138 |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1061 AGAAGATTTCGATGAAAGATTGTTATCGATGCGAGTTACCGGATTCTGTGAAGAATCTAG 1120 Query 1139 CGAATCTGGAGGTGAAATGCGGCGAAGAGACTGCGTTGTTGTGGAAAAGATTGAAACCAA 1198 ||||||||| |||||||||| |||||| |||||||| |||||||||| |||||||||| Sbjct 1121 AGAATCTGGAAGTGAAATGCGACGAAGATACTGCGTTCTTGTGGAAAATATTGAAACCAG 1180 Query 1199 AAATGAAGAATCTAACGATCACAGAGGAAGAGACAGAACATAACCTCAACTTCCTTCAAC 1258 ||||||||||||| ||||||||||||||| | |||||||||||||||||||| ||||||| Sbjct 1181 AAATGAAGAATCTGACGATCACAGAGGAAAAAACAGAACATAACCTCAACTTGCTTCAAC 1240 Query 1259 TGTTTTAA 1266 |||||||| Sbjct 1241 TGTTTTAA 1248 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 62248675800 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5