BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918487
Length=1665
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66840.1 | Symbols: | SAP domain-containing protein | chr5:... 1797 0.0
> AT5G66840.1 | Symbols: | SAP domain-containing protein | chr5:26692922-26695296
REVERSE LENGTH=1656
Length=1656
Score = 1797 bits (973), Expect = 0.0
Identities = 1196/1294 (92%), Gaps = 54/1294 (4%)
Strand=Plus/Plus
Query 5 CGGAGGAGAAGGTAATCATTGATCTCTGTAGCTC---------GGAAGAAGATGTTTCCG 55
||| |||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 8 CGGCGGAGAAGGTAATCATTGATCTCTGTAGCTCGGAAGAGGAGGAAGAAGATGTTTTCG 67
Query 56 GTGATGAGAATAACTATGACGAAACGGAAGAAGAAGCCGAAGAAGATACGAATTCAAGTG 115
||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||
Sbjct 68 GTGATGAGAATAACTATGACGAAACGGAAGAGGAAGAAGACGAAGATACGAATTCAAGTG 127
Query 116 AGGATGATAGCGATTGGAGCCACGATGATGATTATGATGCTACGGAGTCAGATGTTGAAG 175
||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||
Sbjct 128 AGGATGATAGCGATTGGAGCCACGACGATG---ATGATGCTACAGAGTCAGATGTTGAAG 184
Query 176 CTGACGATA-CCG-G-----GGAGA-AA-GACGATGATGATGAGGACGACAAAGTCACTC 226
||||||| | | | | || || || || |||| |||||| || |||||||||||||
Sbjct 185 CTGACGAGATCGGAGTAAAAGGCGATAACGATGATGGTGATGAAGATGACAAAGTCACTC 244
Query 227 GCCTCCTCACAGCCGGAAGCGATTTGAAATCTGTGAATGTGAAAGAGTGCAAAGCATATC 286
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 245 GCCTCCTCACAGCCGGAAGCGATTTGAAATCTGTAAATGTGAAAGAGTGCAAAGCATATC 304
Query 287 TGAGAAAGCATGGTCTAAGATTATCTGGCACCAAACCAGTTTGTATTGACAGAATTGTTG 346
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 305 TGAGAAAGCATGGTCTAAGATTATCTGGCACCAAACCAGTTTGCATTGACAGAATTCTTG 364
Query 347 AGCATTGGAGGATTAAAGATGGAAGC-GGAGAAGCAGTGTATCCAAGATCATCCTTTGCT 405
|||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||
Sbjct 365 AGCATTGGAGGATTAAAGATGGAA-CTGGAGAAGCAGTGTATCCAAAATCATCCTTTGCT 423
Query 406 ATCAATTGTAAAGGTGATGTCTGCAAAGGAGATATTGTTTTGTTTACACAGAAGGTTCAC 465
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 424 ATCAATTGTAAAGGTGATGTCTGCAAAGGAGACATTGTTTTGTTTACACAGAAGGTTCAC 483
Query 466 CACAAGTACGAAAAGATGAAAAGGAGTGGAAATATTATGGGGAGAAGAACTGTCGCTGGC 525
|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 484 CACAAGTATGAAAAGATGAAAAAGAGTGGAAATATTATGGGGAGAAGAACTGTCGCTGGC 543
Query 526 CAGGTTGTTAAAGAAAGCTATGGTACTGCTAAACAACAACACACTTTCACTATTGAAGTG 585
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 544 CAGGTTGTTAAAGAAAGCTATGGTACTGCTAAACAACAACACACGTTCACTATTGAAGTG 603
Query 586 CTCTGGTGCGAGGGGACACAGAAATTGCCTCCTTTGTATCCATTACTAGTCAAAGGACGA 645
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 604 CTCTGGTGTGAGGGGACACAGAAATTGCCACCTTTGTATCCATTACTAGTCAAAGGACGA 663
Query 646 AATCTTTATAGGTTAATGACCTTGAGGCAGCGATGGCCGAATGAAGAAGACAGAGTCAAA 705
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 664 AATCTTTATAGGTTAATGACCTTGAGGCAGCGATGGCCAAATGAAGAAGACAGAGTCAAA 723
Query 706 GTTCTTAACGAAAAGCATAACCGTGGTGCCGCAGCAAGAAAGGTTATGAGAGAAAGGAAA 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 724 GTTCTTAACGAAAAGCATAACCGTGGTGCCGCAGCAAGAAAGGTTATGAGAGAAAGGAAA 783
Query 766 ATTAAGTCAGGCTATGTACTAAAAGATGGAAGACTTCAAAAGCCTGGTCATGTGAAGAAG 825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 784 ATTAAGTCAGGCTATGTACTAAAAGATGGAAGACTTCAAAAGCCTGGTCATGTGAAGAAG 843
Query 826 CCTTGTCAAGTAAAGACAAGAAAAAACGAGAAAGATGAGAATCTAACCCAGAGGCTTAGA 885
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 844 CCTTGTCAAGTAAAGACAAGAAAAAACGAGAAAGATGAGAATCTAACCCAGAGGCTTAGA 903
Query 886 CAAAACGCTCCAGCTAATCATTCACTTGATGCTTTTCCAAACCAAAATCCTTCACAGGGC 945
|||||| |||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 904 CAAAACACTCCCGCTAATCATTCACTTGTTGCTTTTCCAAACCAAAATCCTTCACAGGGC 963
Query 946 CATAAGAATC--C-AACACAGTTGAGAAATATGAATCCC-C------CT-CA-TTC---A 990
|||||||||| | ||||||||||| | ||||||||||| | || || ||| |
Sbjct 964 CATAAGAATCATCCAACACAGTTGACAGATATGAATCCCGCTAATTTCTACACTTCTCGA 1023
Query 991 T-A--TGCTCCTCGTTCACATGCACCTCCTACATATGCTCCTCGACCACATGCTCCTC-T 1046
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1024 CCACATGCTCCTCGTTCACATGCACCTCCTACATATGCTCCTCGACCACATGCTCCTCGT 1083
Query 1047 TACATACGCTCCTATCAATTCACATCTTCCTCGTCCAAACATTTCTCCTTACCACCCCTA 1106
| | ||||||||||||||||||||||||||||||||||| ||| ||||||| || ||||
Sbjct 1084 T-CGTACGCTCCTATCAATTCACATCTTCCTCGTCCAAATATTCCTCCTTATCATTCCTA 1142
Query 1107 TACTTATCCA-ACACAACAAAACCAAACAAACCAAAGACCACCACCTGCCTCCTATACTT 1165
||||||| || | |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1143 TACTTATTCAGA-ACAACAAAACCAAACAAACCAACGACCACCACCTGCCTCCTATACTT 1201
Query 1166 ATCCAACACAGCAAAACCAAAG--------G-CTACCACCTGCCTCCTATACTTATCCAA 1216
|| ||||||| |||||||||| | | ||||||||||||||||||||||||||
Sbjct 1202 ATTCAACACAACAAAACCAAACAAACCAAAGACCACCACCTGCCTCCTATACTTATCCAA 1261
Query 1217 CACAGCAAAACCAAACAAACCAAAGACCACCACC 1250
||||||||||||||||||||||||||||||||||
Sbjct 1262 CACAGCAAAACCAAACAAACCAAAGACCACCACC 1295
Score = 750 bits (406), Expect = 0.0
Identities = 462/489 (94%), Gaps = 4/489 (1%)
Strand=Plus/Plus
Query 1179 AAACCAAAGGCTACCACCTGCCTCCTATACTTATCCAACACAGCAAAACCAAACAAACCA 1238
||||||| | | |||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 1170 AAACCAACGACCACCACCTGCCTCCTATACTTATTCAACACAACAAAACCAAACAAACCA 1229
Query 1239 AAGACCACCACCTGCCTCCTATACTTATTCAACACAGCAAAACCAAACAAACCAAAGACC 1298
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1230 AAGACCACCACCTGCCTCCTATACTTATCCAACACAGCAAAACCAAACAAACCAAAGACC 1289
Query 1299 ACCACCAGCTTTCTACAACAGAAGACCTGCCTCTAATGC-CCTGCAGGGACAAGCATCAT 1357
||||||||||||||||| ||||||| ||||||||||||| || |||||||||||||||||
Sbjct 1290 ACCACCAGCTTTCTACATCAGAAGAACTGCCTCTAATGCTCC-GCAGGGACAAGCATCAT 1348
Query 1358 TCAATCCACATGCCAATACACACGCTGTGCCGATTACTCATCAGAGGAGACCATACCAGA 1417
|||| ||||||| |||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1349 TCAACCCACATGTCAATACACACACTGTGCCGGTTACTCATCAGAGGAGACCATACCAGA 1408
Query 1418 ATCACCATGTCGGCTCGAACAGTGGCTACAACCTCGGAGTGAGGGACTTGGATCACTTCT 1477
| | ||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1409 ACCCCCATGTCAGCTCGAACAGTGGCTACAACCTGGGAGTGAGGGACTTGGAACACTTCT 1468
Query 1478 CGCATATGATGATAAGCCACAGA-GCAGAAGGAGACACATACAGGCAGAGTGAGGTCTCT 1536
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||
Sbjct 1469 CGCATATGATGATAAGCCACAGAAG-AGAAGGAGACACATACAGGCAGAGTGAGGTCACT 1527
Query 1537 CAAGGACCATACATGAACCATCAGACCTACCATTCCAACTTCAGTAGTGGCTACAACCAT 1596
||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 1528 CAAGGGCCATACATGAACCATCAGACCTACCATTCCAACTTCAATAGTAGCTACAACCAT 1587
Query 1597 GGGGCAAGGGACTTGTACATGGTAAACCACGGAAGAGAAGGAGACAATCACAGACCAAAT 1656
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1588 GGGGCAAGGGACTTGTACATGGTAAACAACAGAAGAGAAGGAGACAATCACAGACCAAAT 1647
Query 1657 TATCGATAA 1665
|||||||||
Sbjct 1648 TATCGATAA 1656
Score = 159 bits (86), Expect = 6e-38
Identities = 99/105 (94%), Gaps = 2/105 (2%)
Strand=Plus/Plus
Query 1201 TCCTATACTTATCCA-ACACAGCAAAACCAAACAAACCAAAGACCACCACCTGCCTCCTA 1259
|||||||||||| || | ||| |||||||||||||||||| |||||||||||||||||||
Sbjct 1138 TCCTATACTTATTCAGA-ACAACAAAACCAAACAAACCAACGACCACCACCTGCCTCCTA 1196
Query 1260 TACTTATTCAACACAGCAAAACCAAACAAACCAAAGACCACCACC 1304
||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1197 TACTTATTCAACACAACAAAACCAAACAAACCAAAGACCACCACC 1241
Score = 150 bits (81), Expect = 4e-35
Identities = 83/84 (99%), Gaps = 0/84 (0%)
Strand=Plus/Plus
Query 1103 CCTATACTTATCCAACACAACAAAACCAAACAAACCAAAGACCACCACCTGCCTCCTATA 1162
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1193 CCTATACTTATTCAACACAACAAAACCAAACAAACCAAAGACCACCACCTGCCTCCTATA 1252
Query 1163 CTTATCCAACACAGCAAAACCAAA 1186
||||||||||||||||||||||||
Sbjct 1253 CTTATCCAACACAGCAAAACCAAA 1276
Score = 86.1 bits (46), Expect = 1e-15
Identities = 48/49 (98%), Gaps = 0/49 (0%)
Strand=Plus/Plus
Query 1103 CCTATACTTATCCAACACAACAAAACCAAACAAACCAAAGACCACCACC 1151
||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1247 CCTATACTTATCCAACACAGCAAAACCAAACAAACCAAAGACCACCACC 1295
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82278693255
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5