BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918493
Length=1839
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66790.1 | Symbols: | Protein kinase superfamily protein | ... 2538 0.0
> AT5G66790.1 | Symbols: | Protein kinase superfamily protein
| chr5:26665142-26667531 FORWARD LENGTH=2052
Length=2052
Score = 2538 bits (1374), Expect = 0.0
Identities = 1669/1809 (92%), Gaps = 29/1809 (2%)
Strand=Plus/Plus
Query 1 ATGGCAGAAACTCGC-CCACCGTATCTCGTCTTCGTCTTC-T--TCTTCACTTTAGCCGT 56
||||||||||||| | | |||||||||| ||||||||||| | |||||||| || ||||
Sbjct 40 ATGGCAGAAACTC-CTCAACCGTATCTCATCTTCGTCTTCTTCGTCTTCACTCTAACCGT 98
Query 57 TGCTACACAGACCACCGGTTCGGTTAAGTGCAAGACCGGTTCGCTCAGTTACCCGTTCGG 116
||||||||| ||||||||||||||||||||||| || ||| |||| |||||||||| ||
Sbjct 99 TGCTACACAAACCACCGGTTCGGTTAAGTGCAAAACAAGTTTGCTCCGTTACCCGTTTGG 158
Query 117 TTTCTCCGACGGTTATCCGATCCGATTCAACTGCTCTGAGATAACCGGAGAGGCCGTGAT 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 159 TTTCTCCGACGGTTATCCGATCCGATTCAACTGCTCTGAGATAACCGGAGAGGCCGTGAT 218
Query 177 CGGTGAATTCGCTGTGCAAGAAGTGACAAACACCAACATATACGTCAAAATACCGCCGGT 236
||||||||||||||||||||||||||||||| ||||||| |||||| |||| ||||||||
Sbjct 219 CGGTGAATTCGCTGTGCAAGAAGTGACAAACTCCAACATCTACGTCGAAATCCCGCCGGT 278
Query 237 TTGCGAACGCGAGATCGGTAAAATCGAACAGCTCTTCCGGGAAAAT-TTCGCTCCATCGA 295
|||| ||||| | ||| ||||||||||||| || |||||||||||| || ||||| ||||
Sbjct 279 TTGCAAACGCAACATCCGTAAAATCGAACAACTTTTCCGGGAAAATCTT-GCTCCGTCGA 337
Query 296 AATTACAGAACATAATTCTCGTCCAAGGATGC-----ACGGAAC-ACTCTTTTGATTGTT 349
|||||||||||||||||||||||||||||||| || |||| | |||| | |||| |
Sbjct 338 AATTACAGAACATAATTCTCGTCCAAGGATGCAAGAAACAGAACAAGTCTTCTAATTGCT 397
Query 350 TAATCCGGAGTAAATTCGTTGAGGATCGGTTAAATATCAGCAGATGTAAATCTCAGGTAA 409
||||||| | |||||||||||| | ||||||||| |||||| ||||||||||| ||| |
Sbjct 398 TAATCCGCAATAAATTCGTTGAAAACCGGTTAAATCTCAGCAAATGTAAATCTCCGGTTA 457
Query 410 GCTGTTTCAACCGAACAACAACGACGACGATTGCCGATGTGATGAGTATCGGAGACGTTG 469
||||| || || || |||||||||| | | |||||||||||||||| | || |||||||
Sbjct 458 GCTGTCTCGACGGAGCAACAACGAC-A--ACTGCCGATGTGATGAGTTTAGGCGACGTTG 514
Query 470 TCAACGGAAGTGGATGTAAGTATTGGTTCTCTTCTATTTCTCAATCGCAAGTTTCGGTCA 529
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 515 TGAACGGAAGTGGATGTAAGTATTGGTTCTCTTCTATTTCTCAATCGCAAGTTTCGGTCA 574
Query 530 ATTTGGGTCGGCTTAAGCTTGATTGGTGGCTTAAGGGAAGTTGCAGTAACACCACTTGCT 589
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 575 ATTTGGGTCGACTCAAGCTTGATTGGTGGCTTAAGGGAAGTTGCAGTAACACCACTTGCT 634
Query 590 CGGAGAGCGCAGACTGTGCCAATGTTAAGCTCGCCGACGGGGGACTCGGTCATCGCTGCA 649
|||||| ||||||||||||||| |||||||||| |||||| |||||||||||||||||||
Sbjct 635 CGGAGAACGCAGACTGTGCCAAAGTTAAGCTCGACGACGGTGGACTCGGTCATCGCTGCA 694
Query 650 CTTGTCGCGAAGGATTTAGCGGTAAAGCCTTCACCGTGCCTGGTGGTTGCCACCGATTAG 709
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 695 CTTGTCGTGAAGGATTTAGCGGTAAAGCCTTCACCGTGCCTGGTGGTTGCCACCGATTAG 754
Query 710 TTCGCAAACGCAAAGGACTACACAAACTCATTGTTCTTGGTACTGCAGGGATTTTGGTTG 769
|| ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 755 TTTACAAACGCAAAGGACTACACAAACTCGTTGTTCTTGGTACTGCGGGGATTTTGGTTG 814
Query 770 GCGTTTTAGTAATTGCGGTCTTGATAGTTACATATATCTTCCGG---AA-CAA---GCG- 821
| ||||||||||| | ||||||||||| ||||||| |||||||| || ||| |||
Sbjct 815 GAGTTTTAGTAATCGTGGTCTTGATAGCTACATATTTCTTCCGGAACAAGCAATCTGCGT 874
Query 822 -ATCTGCAAGAACATCAATCGCGAATCGCTTACTTTGCGAGCTAGCCGGAAACTCCAGCG 880
||||| |||| ||||||||||||||||||| ||||||||||||||||||||||| || |
Sbjct 875 CATCTGAAAGAGCATCAATCGCGAATCGCTTGCTTTGCGAGCTAGCCGGAAACTCAAGTG 934
Query 881 TTCCTTTCTACACCTACAAGGAGATTGAGAAAGCTACCGACAGTTTCTCCGACAAGAACA 940
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 935 TTCCTTTCTACACCTACAAAGAGATTGAGAAAGCTACCGATAGTTTCTCCGACAAGAACA 994
Query 941 TGCTCGGAACCGGAGCGTACGGAACAGTCTACGCAGGCGAATTCCCAAACAGCTCATGTG 1000
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 995 TGCTCGGAACCGGAGCATACGGAACAGTCTACGCAGGCGAATTCCCAAACAGCTCATGCG 1054
Query 1001 TCGCTATAAAACGTCTCAGACACAAAGACACCACAAGCATTGACCAAGTTGTTAACGAGA 1060
|||||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||
Sbjct 1055 TCGCTATAAAACGTCTCAAACACAAAGACACTACAAGCATTGACCAAGTTGTGAACGAGA 1114
Query 1061 TCAAGCTTCTTTCCTCTGTGAGCCACCCAAACCTAGTCCGTCTCTTAGGTTGTTGCTTTG 1120
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1115 TCAAGCTTCTTTCCTCTGTGAGCCACCCAAATCTAGTACGTCTCTTAGGTTGTTGCTTTG 1174
Query 1121 CAGATGGAGAACCGTTTCTAGTCTACGAGTTCATGCCAAACGGAACGCTTTATCAGCATT 1180
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 1175 CAGATGGAGAACCGTTTCTAGTCTATGAGTTCATGCCAAACGGAACTCTTTATCAGCATT 1234
Query 1181 TACAACACGAGAGAGGCCAAACACCGCTTTCTTGGCCTCTCCGACTCGCCATAGCGTGTC 1240
|||||||||||||||||||| |||| |||||||||| |||||||||||||| |||||||
Sbjct 1235 TACAACACGAGAGAGGCCAACCACCACTTTCTTGGCAGCTCCGACTCGCCATTGCGTGTC 1294
Query 1241 AAACCGCAAACGCAATAGCACATCTCCACTCTTCAGTACACCCTCCTATCTACCACCGAG 1300
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1295 AAACCGCAAACGCAATCGCACATCTCCACTCTTCAGTAAACCCTCCTATCTACCACCGAG 1354
Query 1301 ACATCAAATCTAGCAACATCCTCCTTGACCACGAATTTAACTCCAAGATCTCTGATTTCG 1360
|||| |||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1355 ACATAAAATCTAGTAACATCCTCCTTGACCACGAATTCAACTCCAAGATATCTGATTTCG 1414
Query 1361 GACTCTCCAGGCTCGGCATGTCCACCGATTTCGAAGCATCTCATATCTCCACGGCTCCAC 1420
||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1415 GACTCTCTAGGCTCGGCATGTCTACCGATTTCGAAGCCTCTCATATCTCCACGGCTCCAC 1474
Query 1421 AAGGCACTCCTGGATA-TGTAGACCCTCAGTATCACCAAGATTTTCAGCTCTCGGACAAG 1479
|||||||||| ||||| | |||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1475 AAGGCACTCCAGGATACT-TAGATCCTCAATATCACCAAGATTTTCAGCTCTCGGACAAG 1533
Query 1480 AGTGATGTCTATAGCTTTGGAGTTGTTCTCATTGAAATCATCTCAGGCTTTAAAGTCATA 1539
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 1534 AGTGATGTCTATAGCTTTGGAGTTGTTCTCGTAGAAATCATCTCAGGCTTTAAAGTCATA 1593
Query 1540 GATTTCACTCGTCCCTACACTGAAGTGAACCTAGCCTCACTTGCGGTTGACAGGATCGGA 1599
|| ||||||||||||||| ||||||||||||||||||| ||||| || ||||||||||||
Sbjct 1594 GACTTCACTCGTCCCTACTCTGAAGTGAACCTAGCCTCTCTTGCCGTCGACAGGATCGGA 1653
Query 1600 AAAGGGCGTGTGGTAGATATCATCGATCCCTGCTTAAA-AACAGACATCGATCCGAAAAT 1658
| |||||||||||||||||||||||||||||||||||| || ||| ||| ||||||||||
Sbjct 1654 AGAGGGCGTGTGGTAGATATCATCGATCCCTGCTTAAACAA-AGAAATCAATCCGAAAAT 1712
Query 1659 GTTTGCATCTATCCACAACTTAGCCGAATTGGCGTTTCGCTGCTTATCATTTCACAGAAA 1718
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1713 GTTTGCATCTATCCACAACTTAGCAGAATTGGCGTTTCGCTGCTTATCCTTTCACAGAAA 1772
Query 1719 CATGAGGCCTACAATGATAGAAATTACGGAAGATCTCCAACGGATTAAGCTTATGTACTT 1778
|||||||||||| ||| |||||||||||||||||||||| ||||||||||||||| |||
Sbjct 1773 CATGAGGCCTACGATGGTAGAAATTACGGAAGATCTCCACCGGATTAAGCTTATGCACTA 1832
Query 1779 TGGTACAGA 1787
|||||||||
Sbjct 1833 TGGTACAGA 1841
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91013588085
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5