BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918499
Length=744
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66740.1 | Symbols: | Protein of unknown function (DUF620) ... 1247 0.0
> AT5G66740.1 | Symbols: | Protein of unknown function (DUF620)
| chr5:26647114-26648558 FORWARD LENGTH=1113
Length=1113
Score = 1247 bits (675), Expect = 0.0
Identities = 721/744 (97%), Gaps = 0/744 (0%)
Strand=Plus/Plus
Query 1 ATGTGTGTCACGGGACAAGTGAAGATGACGGCGTCGGAGTTTCATCAAGGAGATGAATCC 60
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 370 ATGTGCGTCACGGGACAAGTGAAGATGACGGCGTCGGAGTTTCATCAAGGAGATGATTCG 429
Query 61 GGCGTGAATCTTAAGAGTAACGACGAAATGGGTGGTTTCGTTTTGTGGCAGAAGGATCCA 120
||||| ||||| ||||| |||||||||||||||||||||||||| ||||| |||||||||
Sbjct 430 GGCGTTAATCTAAAGAGCAACGACGAAATGGGTGGTTTCGTTTTATGGCAAAAGGATCCA 489
Query 121 GATCTTTGGTGTTTGGAGCTCGTCGTCTCCGGTTGTAAAGTGATATGTGGAAGCAACGGT 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 490 GATCTTTGGTGTTTGGAGCTCGTCGTCTCCGGTTGCAAAGTGATATGTGGAAGCAACGGT 549
Query 181 CGGCTTTCATGGCGGCATTCCTCTAACCAGCAAACTCCGGCGTCTACCGGAACGCCAAGA 240
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 550 CGGCTTTCATGGCGACATTCCTCTAACCAGCAAACTCCGGCGTCTACCGGAACGCCAAGA 609
Query 241 CCTCTCCGCCGGTTTTTACAGGGGTTAGATCCTCGTTCGACGGCGAATCTGTTTCTTGAC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 610 CCTCTCCGCCGGTTTTTACAGGGGTTAGATCCTCGTTCGACGGCGAATCTGTTTCTTGAC 669
Query 301 GCAACGTGCATCGGAGAGAAGATAATCAACGGTGAGGATTGCTTTATCTTGAAACTGGAG 360
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 670 GCAACGTGTATCGGAGAGAAGATAATCAACGGTGAGGATTGCTTTATCTTGAAACTGGAG 729
Query 361 ACGAGTCCGGCGGTTCGAGAAGCTCAAAGCGGTCCGAATTTTGAGATAATTCATCACACG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 730 ACGAGTCCGGCGGTTCGAGAAGCTCAAAGCGGTCCGAATTTTGAGATAATTCATCACACG 789
Query 421 ATTTGGGGTTATTTCAGTCAAAGATCGGGACTTTTAATTCAATTCGAAGATTCGCGACTT 480
|| ||||||||||| |||||||||||||||||||| ||||| |||||||||||||| |||
Sbjct 790 ATATGGGGTTATTTTAGTCAAAGATCGGGACTTTTGATTCAGTTCGAAGATTCGCGGCTT 849
Query 481 TTGAGAATGAGGACCAAGGAAGACGACGATGTTTTCTGGGAGACTAGTGCTGAGTCGGTG 540
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 850 TTGAGAATGAGGACCAAGGAAGACGAAGATGTCTTCTGGGAGACTAGTGCTGAGTCGGTG 909
Query 541 ATGGATGATTACCGATACGTTGACAATGTGAACATCGCTCACGGCGGGAAAACGTCGGTT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 910 ATGGATGATTACCGATACGTTGACAATGTGAACATCGCTCACGGCGGGAAAACATCGGTC 969
Query 601 ACGGTTTTCCGGTACGGTGAAGCGTCGGCGAATCATCGGAGACAGATGACGGAGAAGTGG 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 970 ACGGTTTTCCGGTACGGTGAAGCGTCGGCGAATCATCGGAGACAGATGACGGAGAAGTGG 1029
Query 661 AGGATAGAAGAAGTTGATTTTAATGTTTGGGGACTCTCGGTTGATCATTTTCTTCCTCCG 720
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1030 AGGATAGAAGAAGTTGATTTTAATGTTTGGGGTCTCTCCGTTGATCATTTTCTTCCTCCG 1089
Query 721 GCCAATTTGCAGATTGAAAAATGA 744
|||||||||||||| |||||||||
Sbjct 1090 GCCAATTTGCAGATCGAAAAATGA 1113
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36118351693
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5