BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918501
Length=1242
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66720.1 | Symbols: | Protein phosphatase 2C family protein... 1953 0.0
> AT5G66720.1 | Symbols: | Protein phosphatase 2C family protein
| chr5:26638790-26640816 REVERSE LENGTH=1606
Length=1606
Score = 1953 bits (1057), Expect = 0.0
Identities = 1184/1246 (95%), Gaps = 5/1246 (0%)
Strand=Plus/Plus
Query 1 ATGTCAGCGACTGCTCTCTCGAGATTAAACCCTGTTTCTCAATTTGGGTTTCAAAGAATC 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 137 ATGTCAGCGACTGCTCTCTCGAGATTAAACCCAGTTTCTCAATTTGGGTTTCAAAGAATC 196
Query 61 GTTGCTGGGAAAAGTAAGAGCTTCTTCTCCAATTCCGGTGAAAGGAGATTGTTTTCTGAT 120
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 197 GTTGCTGGGAAAAGTAAGAGCTTCTTCTCCAATTCGGGTCAAAGGAGATTGTTTTCTGAT 256
Query 121 AGCTCTCGGTTTCGTCAAGCCATGGCTGCTTCTGGTTCTTTGCCAGTGTTTGGAGACGCT 180
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 257 AGTTCTCGGTTTCGTCAAGCCATGGCTGCTTCTGGTTCTTTGCCAGTGTTTGGAGACGCT 316
Query 181 TGCTTGGATGATTTGGTTACAACTTGTTCGAATGGCTTAGACTTCACTAAGAAGCGTTCT 240
|| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 317 TGTTTGGATGATTTGGTTACTACTTGTTCAAATGGCTTAGACTTCACTAAGAAGCGTTCT 376
Query 241 AGTGGTGGTAGCTTCACCATTAATTGTCCTGTAGCTAGTATGAGACTTGGGAAGAGAGTG 300
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |
Sbjct 377 AGTGGTGGTAGCTTCACTATTAATTGTCCTGTAGCTAGCATGAGACTTGGGAAGAGAGGG 436
Query 301 GGAATCACGAAGAATCGATTGGTTTGTCACTATTCTGCCATTGAGT-CGCTCGAAAAGAG 359
||||| | |||||| |||||||||||||||||||||| |||| | |||| ||||||||
Sbjct 437 GGAATGATGAAGAACCGATTGGTTTGTCACTATTCTGTTGTTGA-TCCGCTAGAAAAGAG 495
Query 360 TCGTGCACTCTTTGGGACATTGACTAAGAGTGTTCATACATCTCCTATGGCTTGTTTCTC 419
|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 496 TCGTGCACTCTTTGGGACATTGTCTAAGAGTGTTCATACTTCTCCTATGGCTTGTTTCTC 555
Query 420 GGTTGGACCCGCTCATGAGCTGTCTTCTCTTAACGGTGGTTCTCAAGACTCACCACC-A- 477
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 556 GGTTGGACCGGCTCATGAGCTGTCTTCTCTTAACGGTGGTTCTCAAGAGTCACCACCAAC 615
Query 478 -ACTACTACATCTCTTAAGAGTCTCAGGCTAGTGTCGGGGTCATGTTATCTCCCGCATCC 536
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 616 TACTACTACATCTCTTAAGAGTCTTAGGCTAGTGTCGGGGTCATGTTATCTCCCGCATCC 675
Query 537 TGAAAAGGAAGCTACAGGTGGAGAAGACGCTCACTTTATCTGCGATGAAGAACAAGCTAT 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 676 TGAAAAGGAAGCTACAGGTGGAGAAGACGCTCACTTTATCTGCGATGAAGAACAAGCTAT 735
Query 597 TGGAGTTGCAGATGGAGTTGGCGGTTGGGCAGAGGTCGGTGTTAATGCCGGACTGTTTTC 656
|||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||
Sbjct 736 TGGAGTTGCAGATGGAGTTGGCGGTTGGGCTGAGGTTGGTGTTAATGCGGGACTGTTTTC 795
Query 657 GCGTGAGCTTATGTCTTATTCAGTATCAGCGGTTCAAGAACAACATAAAGGTTCTTCTAT 716
||||||||||||||||||||||||||| || |||||||||| |||||||||||||||||
Sbjct 796 GCGTGAGCTTATGTCTTATTCAGTATCTGCAATTCAAGAACAGCATAAAGGTTCTTCTAT 855
Query 717 CGACCCGTTATTGGTGCTAGAGAAAGCACATTCTCAAACCAGAGCCAAAGGCTCCTCCAC 776
|||||| ||| ||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 856 CGACCCTTTAGTGGTGTTAGAGAAAGCACATTCTCAAACCAAAGCCAAAGGCTCCTCCAC 915
Query 777 GGCTTGTATCATCGCTTTAACAGATAAGGGATTACACGCGATTAATCTCGGAGACAGTGG 836
|||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 916 GGCTTGTATCATCGTTTTAAAAGATAAGGGATTACACGCCATTAATCTCGGAGACAGTGG 975
Query 837 ATTCACGGTGGTTAGAGAGGGAACCACGGTGTTTCAGTCTCCGGTTCAGCAGCATGGATT 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 976 ATTCACGGTGGTTAGAGAGGGAACCACGGTGTTTCAGTCTCCGGTTCAGCAGCATGGATT 1035
Query 897 TAACTTCACTTATCAATTAGAGAGTGGAAACAGTGCCGATGTCCCTAGCTCCGGTCAGGT 956
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1036 CAACTTCACTTATCAATTAGAGAGTGGGAACAGTGCCGACGTCCCTAGCTCCGGTCAGGT 1095
Query 957 ATTCACAATAGATGTTGAGTCCGGAGATGTGATTGTCGCTGGAACTGATGGTGTGTATGA 1016
||||||||| |||||| |||| |||||||| |||||||||||||| ||||| ||||||||
Sbjct 1096 ATTCACAATTGATGTTCAGTCTGGAGATGTCATTGTCGCTGGAACAGATGGAGTGTATGA 1155
Query 1017 TAATCTATACAATGAAGAGATCACCGGAGTGGTGGTTAGTTCGGTTAGGGCCGGTTTAGA 1076
|||| ||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||
Sbjct 1156 TAATTTATACAATGAAGAGATCACAGGAGTGGTGGTTAGCTCGGTGAGGGCCGGTTTAGA 1215
Query 1077 CCCGAAAGCCACAGCTCAGAAGATTGCAGATTTGGCACGTCAGAGAGCAGTCGACaaaaa 1136
|||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1216 CCCGAAAGGCACAGCTCAGAAGATTGCAGAGTTGGCACGTCAAAGAGCAGTCGACAAAAA 1275
Query 1137 aaGGCAGAGCCCTTTCGCTACTGCGGCTCAGGAGGCTGGATACAGGTATTACGGAGGAAA 1196
| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1276 ACGGCAGAGCCCTTTCGCAACTGCGGCTCAGGAGGCTGGCTACAGGTATTACGGAGGAAA 1335
Query 1197 GCTTGATGACATCACTGTCGTTGTTTCTTACGTCACCTCATCTTAA 1242
||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 1336 GCTTGATGACATCACTGCCGTCGTTTCTTACGTCACCTCATCTTAA 1381
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61043862720
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5