BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918530
Length=1296
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66460.1 | Symbols: MAN7, AtMAN7 | Glycosyl hydrolase superf... 2078 0.0
AT3G10890.1 | Symbols: | Glycosyl hydrolase superfamily protei... 372 5e-102
AT3G30540.1 | Symbols: | Glycosyl hydrolase superfamily protei... 93.5 5e-18
> AT5G66460.1 | Symbols: MAN7, AtMAN7 | Glycosyl hydrolase superfamily
protein | chr5:26538395-26541036 REVERSE LENGTH=2011
Length=2011
Score = 2078 bits (1125), Expect = 0.0
Identities = 1240/1297 (96%), Gaps = 2/1297 (0%)
Strand=Plus/Plus
Query 1 ATGAAGCTTCTGTG-TTTGTTTCTATTTCTAGCGATCGTGATCCAACTAAGCTGCTGGGA 59
|||||||||||| | | |||||| |||||||||||||||||||||||| ||||| |||||
Sbjct 200 ATGAAGCTTCTG-GCTCTGTTTCCATTTCTAGCGATCGTGATCCAACTCAGCTGTTGGGA 258
Query 60 GCTAGGAGCAGATGCGTTATCGAGCAATGGGTTCGTGAGGACGAAAGGTGTTCAGTTTAG 119
||||||| ||||||| ||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 259 GCTAGGAACAGATGCATTACCGAGCGGTGGGTTCGTGAGGACGAAAGGTGTTCAGTTTAG 318
Query 120 TCTCAATGGCTACCCTTATTACGCTAATGGCTTCAATGCCTACTGGCTCATGTACGTTGC 179
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 319 TCTCAATGGCTATCCATATTACGCTAATGGCTTCAATGCCTACTGGCTCATGTACGTAGC 378
Query 180 CTCTGATCCATCCCAAAGGTCTAAGATCTCCACCGCTTTCCAAGATGCTTCTCGCCATGG 239
||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 379 CTCCGATCCATCCCAACGGTCTAAGATCTCCACCGCTTTCCAAGATGCTTCTCGCCATGG 438
Query 240 ATTAACTGTTGCTCGAACCTGGGCTTTCAGCGATGGCGGTTACAGGGCTCTTCAGTATTC 299
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 439 ATTGACCGTTGCTCGAACCTGGGCTTTCAGCGATGGCGGTTACAGGGCTCTTCAGTATTC 498
Query 300 TCCTGGATCCTACAACGAGGATATGTTTCAGGGTTTGGATTTTGCGATAGCTGAGGCAAG 359
||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 499 CCCTGGCTCCTACAACGAGGATATGTTTCAGGGTTTGGATTTTGCGTTAGCTGAGGCAAG 558
Query 360 AAGGCATGGTATAAAGATAATACTCAGCTTTGCCAATAACTACGAGAGCTTCGGAGGGAG 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 559 AAGGCATGGTATAAAGATAATACTCAGCTTTGCCAATAACTACGAGAGCTTCGGAGGGAG 618
Query 420 GAAGCAATATGTGGATTGGGCTCGAAGCAGAGGCCGTCCCGTCTCTTCTGAAGACGACTT 479
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 619 GAAGCAATATGTGGATTGGGCTCGAAGCAGAGGCCGTCCCGTTTCTTCTGAAGACGACTT 678
Query 480 CTTCACAGACTCTCTTGTTAAAGATTTCTACAAGAACCATATCATGGCTGTGCTGAACAG 539
|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 679 CTTCACTGACTCTCTTGTTAAAGATTTCTACAAGAACCATATCAAGGCTGTGCTGAACAG 738
Query 540 ATTCAATACCTTCACCAAAGTTCATTACAAAGATGACCCAACCATTATGGCTTGGGAGCT 599
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 739 ATTCAATACCTTTACCAAAGTTCATTACAAAGATGACCCAACCATTATGGCTTGGGAGCT 798
Query 600 CATGAACGAGCCCCGTTGCCCCTCAGATCCTTCCGGAAGAACCATTCAGGCTTGGATTAC 659
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 799 CATGAACGAGCCCCGTTGCCCCTCTGATCCTTCCGGAAGAGCCATTCAGGCTTGGATTAC 858
Query 660 TGAAATGACTGCTCATGTGAAATCGCTAGACAGAAACCATCTGCTTGAAGCTGGCCTCGA 719
||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 859 TGAAATGGCTGCTCATGTGAAATCACTAGACAGAAACCATCTGCTTGAAGCTGGCCTCGA 918
Query 720 GGGTTTCTATGGTCAGTCTTCACCTCAAAGCAAGACTCTAAACCCACCTGGCCAGTTTGG 779
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 919 AGGTTTCTATGGTCAGTCTTCACCTCAAAGCAAGACTCTTAACCCACCTGGCCAGTTTGG 978
Query 780 AACCGATTTTATCGCCAATAACCGCATCCCCAGCATTGATTTCGTTACGGTTCACTCTTA 839
||||||||| ||||||||||||||||| ||| ||||||||||||| ||||||||||||||
Sbjct 979 AACCGATTTCATCGCCAATAACCGCATTCCCGGCATTGATTTCGTCACGGTTCACTCTTA 1038
Query 840 CCCTGATGAATGGTTTCCAGACTCAAGCGAGCAATCCCAAATGGATTTCTTGAACAAATG 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1039 CCCTGATGAATGGTTTCCAGACTCAAGCGAGCAATCCCAAATGGATTTCTTGAACAAATG 1098
Query 900 GCTCGACGCACATATCCAAGACGCACAGAACGTTCTTCACAAACCCATAATATTAGCAGA 959
||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1099 GCTAGACGCACACATCCAAGACGCACAGAACGTTCTTCACAAACCAATAATATTAGCAGA 1158
Query 960 GTTTGGCAAATCAATGAAGAAACCAGGTTATACCCCAGCACAGAGAGACATTGTCTTCAA 1019
|||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1159 GTTTGGTAAATCAATGAAGAAACCAGGTTATACCCCAGCGCAGAGAGACATCGTCTTCAA 1218
Query 1020 CACCGTGTACAGCAAGATTTACGGGTCTGCAAAACGAGGTGGTGCAGCAGCAGGAGGATT 1079
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1219 CACCGTGTACAGCAAGATTTACGGGTCTGCAAAACGAGGAGGTGCAGCAGCAGGAGGATT 1278
Query 1080 GTTCTGGCAACTTCTGGTAAATGGAATTGATAATTTTCAAGATGGCTATGGGATCATACT 1139
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1279 GTTCTGGCAACTTCTGGTAAACGGAATTGATAATTTTCAAGATGGGTATGGGATCATACT 1338
Query 1140 TAGCCAAAGCTCGTCCACGGTTAACGTCATTTCACAGCAATCGCGGAAGTTGACTTTGAT 1199
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1339 TAGCCAAAGCTCGTCGACCGTTAACGTCATTTCACAGCAATCGCGGAAGTTGACTTTGAT 1398
Query 1200 TCGGAAAATCTTTGCGAGGATGATCAATGTGGAGAAATGGAAGAGAGCAAGAGGCCGGGG 1259
| |||||||||| || |||||||||||||||||||||||||||||||| ||||| | |||
Sbjct 1399 TAGGAAAATCTTCGCTAGGATGATCAATGTGGAGAAATGGAAGAGAGCGAGAGGTCAGGG 1458
Query 1260 ACAAGTAAGAAAACGAGGTCACAACATCAAAAACTGA 1296
|||||| | |||||||||||||| ||||| ||||||
Sbjct 1459 ACAAGTTGGGAAACGAGGTCACAAAATCAATAACTGA 1495
> AT3G10890.1 | Symbols: | Glycosyl hydrolase superfamily protein
| chr3:3407455-3409000 REVERSE LENGTH=1245
Length=1245
Score = 372 bits (201), Expect = 5e-102
Identities = 782/1053 (74%), Gaps = 77/1053 (7%)
Strand=Plus/Plus
Query 79 TCGAGCAATGGGTTCGTGAGGACG-AAAGGTGTTCAGTTTAGTCTCAAT-GGCTACCCTT 136
||||| |||| |||||||| | | ||||| || ||||||| ||||||| || ||| ||
Sbjct 79 TCGAGTGATGGCTTCGTGAGTA-GAAAAGGCGTCCAGTTTATTCTCAATGGGAAACCATT 137
Query 137 ATTACGCTAATGGCTTCAATGCCTACTGGCTCATGTACGTTGCCTCTGATCC-ATCC-CA 194
||||||||||||||||||||||||||||||| ||||| ||| | ||| | | || ||
Sbjct 138 -TTACGCTAATGGCTTCAATGCCTACTGGCTCGCGTACGAAGCCACCGATTCGA-CCACA 195
Query 195 AAGGTCTAAGATCTCC-ACC-GCTTTCCAAGATGCTTCTCGC-CATGGATTA-ACTGTTG 250
| ||| ||||||| | | | |||| || |||| | | || | ||| || | |
Sbjct 196 A-GGTTTAAGATCACTTATGTG-TTTCAAA-ATGCAAC-CATTCACG-ATTTGACCATCG 250
Query 251 CTC-GAACCTGGGCTTTCAGCGATGGCGGTTACAGGGCTCTTCAGTATT-CTCCTGGA-T 307
|| | || |||| ||| |||||||||| ||| | ||||| || ||| | ||||| |
Sbjct 251 -TCCGCACTTGGGGGTTCCGCGATGGCGGCTACCGCGCTCTCCAA-ATTGCCCCTGGTGT 308
Query 308 CCTACAACGAGGATA-TGTTTCAGGGTTTGGATTTTGCGATAGCTGAGGCAAGAAGGCAT 366
| ||| | || | | | |||||||||||||||||||||||||| || |||| ||| | |
Sbjct 309 C-TACGATGAAAAAACT-TTTCAGGGTTTGGATTTTGCGATAGCGGAAGCAAAAAGAC-T 365
Query 367 -GGTATAAAGATAATACTCAGCTTTGCCAATAACTA--CGAGAGCTTCGGAGGGAGGAAG 423
|||||||| || ||| ||| ||||| ||||||||| | || ||| |||||||||||
Sbjct 366 CGGTATAAAAATGATAATCACCTTTGTCAATAACTATTCT-GA-CTTTGGAGGGAGGAAA 423
Query 424 CAATATGTGGATTGGGCTCGAAGCAGAGGCCGTCCCGTCTCTTCTGAAGACGACTTCTTC 483
||||| || ||||||||| || || ||||| ||| ||||| || ||||| |||| |
Sbjct 424 CAATACGTTGATTGGGCTAAAAACACAGGCCAAAACGTATCTTCAGATGACGATTTCTAC 483
Query 484 ACAGACTCTCTTGTTAAAGATTTCTACAAGAACCATATCATGGCTGTGCTGAACAGATTC 543
||| || ||||||||||| | | |||||||||||| ||| | || || |||||||| |
Sbjct 484 ACAAACCCTCTTGTTAAACAGTACTACAAGAACCACGTCAAGACTATGGTGAACAGAGTG 543
Query 544 AATACCTTCACCAAAGTTCATTACAAAGATGACCCAACCATTATGGCTTGGGAGCTCATG 603
||||| || ||||||||| | ||||||||||| ||||||||||||| ||||||||| |||
Sbjct 544 AATACATTTACCAAAGTTGAGTACAAAGATGAACCAACCATTATGGGTTGGGAGCTTATG 603
Query 604 AACGAGCCCCGTTGCCCCTCAGATCCTTCCGGAAGAACCATT-CAGGCTTGGATTACTGA 662
||||| || | ||| ||||||| |||| |||| || | ||||||||| | |||
Sbjct 604 AACGAACCACAATGCAGAGCAGATCCAAGTGGAAAAACCCTTAC-GGCTTGGATGAATGA 662
Query 663 AATGACTGCTC-ATGTGAAATC-GCTAGACAGAAACCATCTGCT-TGAAGCTGGCCTCGA 719
|||| || || |||||||||| | | ||| ||| ||||| || | | |||| || ||
Sbjct 663 AATGGCT-CTTTATGTGAAATCTGTT-GACTCAAAGCATCTCCTCTCTA-CTGGTCTTGA 719
Query 720 GGGTTTCTATGGTCAGTCTTCACCTCAAAGCAAGAC-TCT--AAACCCACCTG--GCCA- 773
|| ||||||||| | || || |||||||| ||||| ||| ||| || || ||||
Sbjct 720 AGGCTTCTATGGTGACTCATCTCCTCAAAGAAAGACATCTCTAAATCCGGTTGCAGCCAA 779
Query 774 -GTT-T-GGAACCGATTTTATCGCCAATAACCGCATCCCCA-GC-ATTGATTTCGT-TAC 827
||| | ||||| ||||| ||||| ||| || | | | | || |||||||||| | |
Sbjct 780 CGTTCTTGGAACTGATTTCATCGCTAATCACAA-A-CTCGATGCCATTGATTTCGCAT-C 836
Query 828 GGTTCACTCTTACCCTGA-TGAATGGTTTCCAGACTCA-AGCGAGCAATCCCAAATGGAT 885
| ||||||||||||| || | | ||||||||| ||| | ||| |||| | | | |
Sbjct 837 GATTCACTCTTACCCCGACTTA-TGGTTTCCAAACTTGGAT-GAGAAATCTCGATTAAAC 894
Query 886 TTCTTGAACAAA-TGGCTCGAC-G-CACATATCCAAGACGCACAGAACGTTCTTCACAAA 942
|| || || ||| |||||||| | ||| | | |||| ||||| ||| ||||| | |||
Sbjct 895 TTGTT-AAGAAAATGGCTCGAATGTCACCT-TG-AAGATGCACAAAACATTCTTAAAAAA 951
Query 943 CC-CATAATATTAGCAGAGTTTGGCAAATCAATGAAGAAACCAGGTTATACCCCAG-CAC 1000
|| | |||| ||| ||| || || ||| ||| ||| | |||||| || || | || | |
Sbjct 952 CCTC-TAATCCTAGGAGAATTCGGGAAACCAACGAACACACCAGGCTACACTC-AGGCTC 1009
Query 1001 AGAGAGACATTGTCTTCAACAC--CGTGT-ACAGCAAGATTTACGGGTCTGC--AAAACG 1055
|||||||| || |||||| | ||| | ||| || |||||| |||||| ||||
Sbjct 1010 AGAGAGACGCAGTGTTCAACGCAACGTTTGACACCA---TTTACGAGTCTGCTGAAAA-- 1064
Query 1056 AGGTGGTGCAGCAGCAGGAGGATTGTTCTGGCA 1088
||| ||| |||| ||||||| |||||| |||||
Sbjct 1065 AGGCGGTCCAGCTGCAGGAGCATTGTTTTGGCA 1097
> AT3G30540.1 | Symbols: | Glycosyl hydrolase superfamily protein
| chr3:12144792-12146502 REVERSE LENGTH=1017
Length=1017
Score = 93.5 bits (50), Expect = 5e-18
Identities = 101/125 (81%), Gaps = 6/125 (5%)
Strand=Plus/Plus
Query 86 ATGGGTTCGTGAGGACGAAAGGTGTTCAGTTTAGTCTCAAT-GGCTACCCTTATTACGCT 144
||||||||||||| | ||| || || || |||| ||||||| || ||| || |||||||
Sbjct 107 ATGGGTTCGTGAGCAGGAATGGCGTCCAATTTATTCTCAATGGGAAACCATT-TTACGCT 165
Query 145 AATGGCTTCAATGCCTACTGGCTCATGTACGTTGCCT-CTGATCCATCC-CAAAGGTCTA 202
|||||||||||||||||||||||| ||||| || | | |||||| || ||| | | ||
Sbjct 166 AATGGCTTCAATGCCTACTGGCTCGCGTACGAAGC-TACCGATCCAGCCACAA-GATTTA 223
Query 203 AGATC 207
|||||
Sbjct 224 AGATC 228
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63754692150
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5