BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918532
Length=813
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66450.1 | Symbols: | Phosphatidic acid phosphatase (PAP2) ... 1014 0.0
> AT5G66450.1 | Symbols: | Phosphatidic acid phosphatase (PAP2)
family protein | chr5:26534616-26536045 FORWARD LENGTH=1140
Length=1140
Score = 1014 bits (549), Expect = 0.0
Identities = 769/865 (89%), Gaps = 56/865 (6%)
Strand=Plus/Plus
Query 1 ATGGCAGCGTCATCATC-TCTC--CTTCTTCTCCAC-AGACACACCTGCAATTTCTATTC 56
||||||||||||||||| |||| |||||||||||| || | ||||| ||||||| |||
Sbjct 186 ATGGCAGCGTCATCATCTTCTCTTCTTCTTCTCCACAAG-CCCACCTACAATTTCCATTT 244
Query 57 CGCCGCTTCCTCTG--------T---TC----CCGCTCGATTTCGAATTTCGAG------ 95
|||||||||||||| | || ||||||||||||||||||||||
Sbjct 245 CGCCGCTTCCTCTGTTCCCACTTACATCAATTCCGCTCGATTTCGAATTTCGAGCTCAAT 304
Query 96 ---CCCTTTGGATCGGAGAAGAAGAAGAAGAATCTGGTCTGCCTCTGGCTCTACTAAATC 152
|||||||||||| ||||||||||||||||||||||||| |||||||| | ||||||
Sbjct 305 CTTCCCTTTGGATCGAAGAAGAAGAAGAAGAATCTGGTCTGTCTCTGGCT-T--TAAATC 361
Query 153 TATGGCCGATTTAGTCAAAACCAATGCTCGCAGAGACGGTGAAGAACGATTTCAGGCGCT 212
|||||||||||| || ||||||||||||||||||||||||||||| ||||| || |||||
Sbjct 362 TATGGCCGATTTGGTTAAAACCAATGCTCGCAGAGACGGTGAAGATCGATTCCAAGCGCT 421
Query 213 CGAGCAAGAGGCTTTTATCAATAATTCGTCGTC---G-----G-AC-----GG----CGA 254
||||||||||||||| |||| |||||||||||| | | || || |||
Sbjct 422 CGAGCAAGAGGCTTTCATCAGTAATTCGTCGTCGGAGCTCCAGAACGAGTTGGTATCCGA 481
Query 255 ---C-G-G-TGGTATTGAAGCAATCGCTAATCGTCTGAGCAAATGGATTGTAGCTGCTCT 308
| | | ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 482 CGCCGGCGATGGTATTGAAGCAATCGCTAATCGTCTGAGCAAATGGATTGTAGCAGCTCT 541
Query 309 ATTTGGATCCGTTCTGCTTCTACGACATGATGGTGCAGCTTTGTGGGCTGTCATTGGATC 368
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 542 GTTTGGATCCGTTCTGCTTCTACGACATGATGGTGCAGCTTTGTGGGCTGTGATTGGATC 601
Query 369 CGTTTCAAATTCTGCGCTCTCAGTAGCTTTGAAACGTTTACTTAACCAAGAGAGACCTGT 428
||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 602 GGTTTCAAATTCCGTGCTCTCAGTAGCTTTGAAACGTATACTTAACCAAGAGAGACCTGT 661
Query 429 TGCTACGCTGCGTTCTGATCCTGGGATGCCATCTTCTCATGCCCAATCCATTTCTTTCAt 488
|||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 662 TGCTACTCTCCGTTCTGATCCTGGGATGCCTTCTTCTCATGCCCAATCCATTTCTTTCAT 721
Query 489 ctctctcttttctctcttctcCGTTATGGAGTGGCTTGGAACCAATGTGCTCTCTCTGCT 548
|||| | |||||| |||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 722 CTCTGTGTTTTCTGTCTTCTCCGTTATGGAGTGGCTTGGAACCAATGTACTCTCTCTGTT 781
Query 549 CCTTAGCGGCCTCATCCTCGCACTGGGTTCTTATTTTACATGGTTAAGGGTTTCTCAGAA 608
|||||||||| ||||||||||| ||||||||||||| || ||||||||||||||||||||
Sbjct 782 CCTTAGCGGCTTCATCCTCGCATTGGGTTCTTATTTCACGTGGTTAAGGGTTTCTCAGAA 841
Query 609 GCTTCACACTACAAGTCAAGTTGTCGTAGGTGCAATCGTGGGTTCTGTTTACTCCACCTT 668
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 842 GCTTCACACGACAAGTCAAGTGGTCGTAGGTGCAATCGTGGGTTCTGTTTACTCCACCTT 901
Query 669 ATGGTATGTAACTTGGAACTCACTTGTTCTTGAAGCCTTTACCTCATCATTCTCAGTACA 728
||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 902 ATGGTATGTAACTTGGAACTCTCTTGTTCTTGAAGCCTTTACCTCAACATTCTCAGTACA 961
Query 729 AATAGCTGTCTTTCTGGTCGCCGCTGCGTCTGCTTTAGGTTTTGCAGTATATGTGCTACT 788
||||||| |||||||||| || |||||||||||||||||||||||||| |||||||||||
Sbjct 962 AATAGCTCTCTTTCTGGTTGCTGCTGCGTCTGCTTTAGGTTTTGCAGTTTATGTGCTACT 1021
Query 789 TAACTGGTTTAAAGATGACAGATGA 813
|||||||||||||||||||||||||
Sbjct 1022 TAACTGGTTTAAAGATGACAGATGA 1046
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39584507836
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5