BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918538
Length=924
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66380.1 | Symbols: ATFOLT1, FOLT1 | folate transporter 1 | ... 1487 0.0
> AT5G66380.1 | Symbols: ATFOLT1, FOLT1 | folate transporter 1
| chr5:26513524-26515695 REVERSE LENGTH=1210
Length=1210
Score = 1487 bits (805), Expect = 0.0
Identities = 887/927 (96%), Gaps = 3/927 (0%)
Strand=Plus/Plus
Query 1 ATGGCGGCGCCGTGGCAGTGGGAAAACGCCACCGCCGGCGCCGTCGCTGGATTCGCCACC 60
||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 163 ATGGCGGCGTCGTGGCAGTGGGAAAATGCCACCGCCGGCGCCGTCGCTGGATTCGCCACC 222
Query 61 GTAGCTGCTATGCACCCTCTTGATGTTGTTCGTACGAGATTCCAAGTCAACGACGGTAGA 120
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 223 GTAGCTGCTATGCACTCTCTTGATGTTGTTCGTACGAGATTCCAAGTCAACGACGGAAGA 282
Query 121 GGGTCAAGTCTCCCGACGTACAAGAACACTGCTCACGCTGTCTTCACCATTGCCCGTCTC 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 283 GGGTCAAGTCTGCCGACGTACAAGAACACTGCTCACGCTGTCTTCACCATTGCCCGTCTC 342
Query 181 GAGGGTTTGAGAGGACTTTATGCAGGCTTCTTCCCTGCAGTTATCGGTTCTACTGTTTCA 240
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 343 GAGGGTTTGAGAGGGCTTTATGCAGGCTTCTTCCCTGCAGTTATCGGTTCTACTGTTTCC 402
Query 241 TGGGGATTATACTTCtttttttATGGAAGAGCCAAGCAGAGATACGCTAGAGGAAGGGAC 300
||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 403 TGGGGCTTATACTTCTTTTTTTATGGAAGAGCCAAGCAGAGGTACGCTAGAGGCAGGGAC 462
Query 301 GATGAGAAACTCAGCCCCGGTCTTCACCTTGCTTCCGCTGCTGAAGCAGGGGCCCTGGTC 360
||||||||||||||||| | ||| ||||||||||| |||||||||||||||||| |||||
Sbjct 463 GATGAGAAACTCAGCCCTGCTCTCCACCTTGCTTCTGCTGCTGAAGCAGGGGCCTTGGTC 522
Query 361 TGTTTATGCACAAATCCGATTTGGCTTGTGAAAACAAGGTTACAGCTCCAGACACCTCTT 420
||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 523 TGTTTATGCACAAATCCTATTTGGCTTGTCAAAACAAGGTTACAGCTTCAGACACCTCTT 582
Query 421 CATCAAACCCAACCATACTCAGGGCTATTAGATGCCTTTAGAACCATAGTGAAAGAGGAA 480
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 583 CATCAAACTCAACCATACTCAGGGCTATTAGATGCCTTTAGAACCATAGTGAAAGAGGAA 642
Query 481 GGACCCAGGGCGCTCTACAAGGGTATTGTCCCTGGTCTTGTTCTGGTTTCTCATGGTGCT 540
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 643 GGACCCAGGGCGCTCTACAAGGGTATTGTCCCTGGTCTTGTACTGGTTTCTCATGGTGCT 702
Query 541 ATTCAGTTCACAGCATATGAGGAACTCCGTAAAATCATTGTGGATTGGAAAGAAAGGAGA 600
|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 703 ATTCAGTTCACAGCTTATGAGGAACTCCGTAAAATCATTGTGGATTTGAAAGAAAGGAGA 762
Query 601 AGAAAGTCTGAATCCGCTGACAATCTATTGAACTCAGCAGATTATGCTGCACTTGGCGGC 660
|||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 763 AGAAAGTCCGAATCCACTGACAATCTATTGAACTCAGCAGATTATGCTGCACTTGGTGGC 822
Query 661 TCCTCCAAAGTTGCTGCAGTTCTTCTTACGTATCCATTTCAGGTTATTCGAGCACGATTG 720
||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 823 TCCTCCAAAGTCGCTGCAGTTCTTCTTACGTATCCATTTCAAGTTATACGAGCACGATTA 882
Query 721 CAGCAAAGACCTAGTACTAACGGAATTCCAAGATATATAGACAGCTTCCATGTCATCAGA 780
|||||| |||||||||| |||||||| |||||||||||||||||||| ||||||||||||
Sbjct 883 CAGCAACGACCTAGTACCAACGGAATCCCAAGATATATAGACAGCTTACATGTCATCAGA 942
Query 781 GAAACTGCGAGATATGAAGGTCTCAGAGGTTTCTACAGGGGACTAACGGCTAATCTTTTG 840
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 943 GAAACCGCGAGATATGAAGGTCTCAGGGGTTTCTACAGGGGACTAACGGCTAATCTTTTG 1002
Query 841 AAAAATGTACCTGCGTCTTCCATCACATTCATCGTCTATGAAAACGTCCTGAAATTGCTA 900
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1003 AAAAATGTACCTGCGTCTTCCATCACATTCATCGTCTATGAAAACGTTCTGAAATTGCTA 1062
Query 901 AAACAGCCTCCAACAA-AA--GATTAG 924
||||||| |||||||| || ||||||
Sbjct 1063 AAACAGCATCCAACAACAAAAGATTAG 1089
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45160498153
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5