BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918548
Length=1101
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66280.1 | Symbols: GMD1 | GDP-D-mannose 4,6-dehydratase 1 |... 1724 0.0
> AT5G66280.1 | Symbols: GMD1 | GDP-D-mannose 4,6-dehydratase 1
| chr5:26476166-26477754 FORWARD LENGTH=1589
Length=1589
Score = 1724 bits (933), Expect = 0.0
Identities = 1032/1081 (95%), Gaps = 2/1081 (0%)
Strand=Plus/Plus
Query 22 TCCAGATCTCTTAACGGCCATTCCGACATTCCGCAGCCGAGGAAGATTGCACTGGTCACC 81
||||||||||| || ||| ||||||||||| | ||||||||||||||||||||||||||
Sbjct 275 TCCAGATCTCTCAATGGCGATTCCGACATTGTGAAGCCGAGGAAGATTGCACTGGTCACC 334
Query 82 GGTATCACTGGCCAGGATGGATCTTACCTGACAGAGTTCCTGCTCGAGAAAGGCTACCAA 141
|| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 335 GGAATCACTGGCCAAGATGGATCTTACCTGACCGAGTTCCTGCTCGAGAAAGGCTACGAA 394
Query 142 GTTCACGGCCTCATCCGACGATCCTCCAATTTCAACACTCAGCGAATCAACCATATCTAC 201
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 395 GTTCACGGCCTCATCCGACGATCCTCCAATTTTAACACTCAGCGACTCAACCATATCTAC 454
Query 202 GTCGATCCCCACAATGCCAACAAAGCTCTCATGAAGCTCCACTACGCTGATCTCTCTGAT 261
|| ||||||||||| | ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 455 GTTGATCCCCACAACGTCAACAAAGCTCTCATGAAGCTCCACTACGGTGATCTCTCTGAT 514
Query 262 GCCTCCTCTCTCCGCCGTTGGCTCGACGTCATCAAGCCTGACGAGGTCTACAACCTTGCT 321
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 515 GCCTCCTCCCTCCGCCGTTGGCTCGACGTCATCAAGCCTGACGAGGTCTACAACCTTGCT 574
Query 322 GCTCAGTCCCACGTCGCCGTCTCATTCGAGATCCCTGACTACACTGCTGACGTCGTCGCT 381
|||||||||||||| |||||||| |||||||||||||| |||||||||||||| ||||||
Sbjct 575 GCTCAGTCCCACGTTGCCGTCTCCTTCGAGATCCCTGATTACACTGCTGACGTTGTCGCT 634
Query 382 ACTGGAGCTCTTCGTCTCCTGGAGGCTGTCAGATCTCACAACATCGACAACGGCCGTGCC 441
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||
Sbjct 635 ACTGGAGCTCTTCGTCTCCTGGAGGCTGTCAGATCTCACAACATTGACAATGGCCGCGCC 694
Query 442 ATCAAGTACTACCAGGCTGGCTCTTCCGAGATGTTCGGGTCAACTCCTCCTCCCCAGTCA 501
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 695 ATCAAGTACTACCAGGCTGGCTCTTCGGAGATGTTCGGGTCAACTCCTCCTCCGCAGTCA 754
Query 502 GAGACCACGCCTTTTCATCCGAGATCTCCCTACGCTGCCTCCAAATGCGCTGCTCATTGG 561
||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 755 GAGACCACGCCCTTCCATCCGAGATCTCCCTACGCTGCGTCCAAATGCGCTGCTCATTGG 814
Query 562 TACACTGTCAATTACCGAGAGGCCTACGGTCTGTACGCCTGCAACGGAATCCTCTTCAAC 621
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 TACACAGTCAATTACCGAGAGGCCTACGGTCTGTACGCCTGCAACGGAATCCTCTTCAAC 874
Query 622 CACGAGTCACCTCGCAGAGGCGAGAACTTCGTGACTAGGAAAATCACTCGGGCCTTGGGA 681
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 875 CACGAGTCACCTCGCAGAGGCGAGAACTTCGTGACTCGGAAAATCACTCGGGCCTTGGGA 934
Query 682 AGGATCAAGGTCGGATTGCAGACCAAGCTCTTCCTGGGAAATATACAGGCTTCAAGAGAC 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 935 AGGATCAAGGTCGGATTGCAGACCAAGCTCTTCCTGGGAAATATACAGGCTTCAAGAGAC 994
Query 742 TGGGGCTTCGCAGGAGACTACGTGGAAGCAATGTGGCTGATGCTGCAGCAGGAGAAACCA 801
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 995 TGGGGTTTCGCAGGAGACTACGTGGAAGCAATGTGGCTGATGCTGCAGCAGGAGAAACCA 1054
Query 802 GATGACTACGTGGTTGCAACTGAAGAATCACACACCGTCGAGGAGTTTCTGGAGGTGTCC 861
|||||||| |||||||||||||| ||||||||||||||| ||||||||||||| |||||
Sbjct 1055 GATGACTATGTGGTTGCAACTGAGGAATCACACACCGTCAAGGAGTTTCTGGACGTGTC- 1113
Query 862 TTT-GGGTACGTCGGGCTCAACTGGAAAGACCATGTCGAGATCGACAAGAGGTACTTTCG 920
||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1114 TTTCGGGTACGTGGGGCTCAACTGGAAAGACCATGTCGAGATCGACAAAAGGTACTTCCG 1173
Query 921 GCCAACAGAGGTGGACAATCTGAAAGGAGACGCAAGCAAGGCAAAGGAGATGTTGGGGTG 980
||| || ||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1174 GCCCACGGAGGTCGACAATCTGAAAGGAGACGCAAGCAAGGCAAAGGAAATGTTGGGGTG 1233
Query 981 GAAGCCGAAAGTAGGGTTCGAAAAGCTGGTGAAGATGATGGTGGACGAAGACCTTGAGCT 1040
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1234 GAAGCCAAAAGTAGGGTTCGAGAAGCTGGTGAAGATGATGGTGGACGAAGACCTTGAGCT 1293
Query 1041 GGCCAAGAGGGAGAAAGTGCTCGCCGACGCTGGTTACATTGACGCTCAGCAGCAACCATG 1100
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1294 GGCCAAGAGGGAGAAAGTGCTCGCCGACGCTGGTTACATGGACGCTCAGCAGCAACCTTG 1353
Query 1101 A 1101
|
Sbjct 1354 A 1354
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53965585875
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5