BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg918550

Length=300
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G66260.1 | Symbols:  | SAUR-like auxin-responsive protein fa...   505    1e-142


> AT5G66260.1 | Symbols:  | SAUR-like auxin-responsive protein 
family  | chr5:26471269-26471658 FORWARD LENGTH=300
Length=300

 Score =  505 bits (273),  Expect = 1e-142
 Identities = 291/300 (97%), Gaps = 0/300 (0%)
 Strand=Plus/Plus

Query  1    ATGGGAGTAGAAAGGGGAAGTGGTAAGGCTCTGAAGAAGATGTTAAAGAGATGTTCGAGT  60
            |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct  1    ATGGGAGTAGAAAGGGGAAGTGGTAAGGGTCTGAAGCAGATGTTAAAGAGATGTTCGAGT  60

Query  61   TTGGGGAAGAAGAGCAACGTCGACGTTAACTTTAACGGCGTCCCCAAAGGTCACTTCGTC  120
            || ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct  61   TTAGGGAAGAAGAGCAGCGTCGACGTTAACTTCAACGGCGTCCCCAAAGGTCACTTCGTC  120

Query  121  GTTTACGTTGGTCACTCTAGATCCCGACACGTCATCCCCATCTCCTTCCTCACGCACCCC  180
            || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  121  GTCTACGTTGGTCACTCTAGATCCCGACATGTCATCCCCATCTCCTTCCTCACGCACCCC  180

Query  181  ATCTTCCAGATGTTGCTGCAACAGTCTGAGGAAGAGTTTGGGTTCTTTCAAGACAATGGC  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  ATCTTCCAGATGTTGCTGCAACAGTCTGAGGAAGAGTTTGGGTTCTTTCAAGACAATGGC  240

Query  241  CTAACCATCCCTTGTGATGAACACTTCTTTCGATCTCTCATTTCCTCCGTTAATCCTTAA  300
            ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct  241  CTAACCATCCCTTGTGATGAACACTTCTTTCGAGCTCTCATTTCCTCCATTAATCCTTAA  300



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13873898724


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5