BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918552
Length=996
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66240.2 | Symbols: | Transducin/WD40 repeat-like superfami... 1690 0.0
> AT5G66240.2 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr5:26466204-26468448 FORWARD LENGTH=1387
Length=1387
Score = 1690 bits (915), Expect = 0.0
Identities = 969/996 (97%), Gaps = 0/996 (0%)
Strand=Plus/Plus
Query 1 ATGGTGGAATTTACAGAGAGAGAGGACCGAGTTTCTTTGGAACTCAGCGAAGAAATTATA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 145 ATGGTGGAATTTACAGAGAGAGAGGACCGAGTTTCTTTGGAACTCAGCGAAGAAATTATA 204
Query 61 CAGAGCATGGAACCTGGCGCCGTTTTCAGAGACTATAATTGCAGGATCAGCTCGATTGAC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 205 CAGAGCATGGAACCTGGCGCCGTTTTCAGAGACTATAATTGCAGGATCAGCTCAATTGAC 264
Query 121 TTTCACAAAACTTCGACTTGTATGGTGACAGCTAGCGACGATGACTCAATTCGTCTCTAT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 265 TTTCACAAAACTTCGACTTGTATGGTGACAGCTAGCGACGATGACTCAATTCGTCTCTAT 324
Query 181 GATGTTGCCAGCGCCACATGTCTGAAGACAATCAATAGCAAAAAGTATGGTGTTGATCTT 240
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 325 GATGTTGCCAGCGCCACATGTCTGAAGACAATTAATAGCAAAAAGTATGGTGTTGATCTT 384
Query 241 GTTTGCTTCACTTCCCATCCTACTACTGTCATCTACTCTTCCAGAAACGGATGGGACGAT 300
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 385 GTTTGCTTCACTTCTCATCCTACTACTGTCATCTACTCTTCCAGAAACGGATGGGACGAC 444
Query 301 TCTCTGAGGCTTCTCTCTTTGCACGATAATAAGTACTTGCGCTACTTCAAAGGCCATCAT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 445 TCTCTGAGGCTTCTCTCTTTGCACGATAATAAGTACTTGCGCTACTTCAAAGGACATCAT 504
Query 361 GACAGAGTTGTTTCGCTTAGCTTGTGTTCTGGTGGAGAATGCTTCATCTCCGGTTCCCTT 420
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 505 GACAGAGTTGTTTCGCTTAGCTTGTGTTCTGGTGGGGAATGCTTCATCTCCGGTTCCCTT 564
Query 421 GATCGAACTGTTTTGCTTTGGGATCAAAGGGTCGAGAAATGCCAGGGTCTCTTACGAGTC 480
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 565 GATCGTACTGTTTTGCTTTGGGATCAAAGGGTCGAGAAATGCCAGGGTCTCTTACGAGTC 624
Query 481 CAAGGAAGGCCTGCTGCAGCATATGATGATCAAGGGTTAGTTTTTGCAATTGCCTTTGGT 540
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 625 CAAGGAAGGCCTGCTGCAGCATATGATGATCAAGGGTTAATTTTTGCAATTGCCTTTGGT 684
Query 541 GGCTACATAAGAATGTTTGATGCCCGTATGTATGAAAAGGGTCCTTTTGAAATATTTTCC 600
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 685 GGCTACATAAGAATGTTTGATGCCCGTATGTACGAAAAGGGTCCTTTTGAAATATTTTCC 744
Query 601 GTTGGTGGTGATCTCTCTGAAGCAAACGTTGTGAAATTTAGTAATGATGGAAGGCTCATG 660
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 745 GTTGGTGGTGATCTTTCTGAGGCAAACGTTGTGAAATTTAGTAATGATGGAAGGCTCATG 804
Query 661 CTGCTTACAACCATGGATGGTTTTATTCATGTGCTTGACTCGTTTCGTGGAACACTTCTG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 805 CTGCTTACAACCATGGATGGTTTTATTCATGTGCTTGACTCGTTTCGTGGAACTCTTCTG 864
Query 721 TCCACATTTAGTGTGAAACCAGTAGCTGCAGAATCTACATTGGATGCAACCTTCAGTCCT 780
|||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||
Sbjct 865 TCCACATTTAGTGTGAAACCAGTAGCTGGAGAATCTACATTGGATGCAGCCTTTAGTCCT 924
Query 781 GAAGGGATGTTTGTTGTTTCAGGTTCAGGTGATGGTAGTACCCATGCATGGGGTGTAAGG 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 925 GAAGGGATGTTTGTTGTTTCAGGTTCAGGTGATGGTAGTACCCATGCATGGGGTGTAAGG 984
Query 841 AGCGGAAAACAGGTACATAGTTGGATGGGTATAGGCAGTGAGCCCCCAGTCATTAAATGG 900
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 985 AGCGGAAAACAGGTACATAGTTGGATGGGTTTAGGGAGTGAGCCCCCAGTCATTAAATGG 1044
Query 901 GCTCCAGGAAGTCCCATGTTTGTGACCGGCTCTTTGGAACTTGCGTTTGTTATTCCCGAC 960
| |||||||||||||||||||||||| ||||||| |||||||| |||||||| ||||||
Sbjct 1045 GGTCCAGGAAGTCCCATGTTTGTGACAGGCTCTTCCGAACTTGCTTTTGTTATACCCGAC 1104
Query 961 TTGTCTAAACTGCCAGCTTATGCCATACGGAAATAG 996
|| || ||| |||||||||||||||| |||||||||
Sbjct 1105 TTATCGAAATTGCCAGCTTATGCCATTCGGAAATAG 1140
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48777356737
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5