BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918555
Length=672
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66220.1 | Symbols: | Chalcone-flavanone isomerase family p... 773 0.0
> AT5G66220.1 | Symbols: | Chalcone-flavanone isomerase family
protein | chr5:26461177-26462174 FORWARD LENGTH=696
Length=696
Score = 773 bits (418), Expect = 0.0
Identities = 613/701 (87%), Gaps = 38/701 (5%)
Strand=Plus/Plus
Query 1 ATGCCGTTGCCTTCGGTGACTCCACTCCACGTCGACGCATTTACTTTTCCTCTGGCTGTT 60
|||||| ||||||| ||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 1 ATGCCGCTGCCTTCCGTGACGCCACTCCACGTCGACGCATTTACTTTTCCTCCGGCTGTT 60
Query 61 GAGTCGCCCGCTTCCCACAAAAAG-CTTTT-C-C-----T-C---G----G-TGG--TG- 100
|||||||||||||||||| ||||| ||||| | | | | | | ||| ||
Sbjct 61 GAGTCGCCCGCTTCCCAC-AAAAGACTTTTCCTCGGTGGTGCAGGGATATGATGGTTTGA 119
Query 101 -----CAGGCAAGTTCGTGATTGTGACGGTCATCGGAGTCTACCTTGAAGCTATGGCACT 155
||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 120 TATTAAAGGCAAGTTCGTGATTGTGACGGTCATCGGAGTCTACCTTGAAGCCATGGCACT 179
Query 156 ACCATCACTCTCCGTTAACTGGAAAGGCAAGAATGCAAAGGAGTTGACGGAATCCGTCCC 215
|| ||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GCCGTCAATCTCCGCTAAGTGGAAAGGCAAGAATGCAAAGGAGTTGACGGAATCCGTCCC 239
Query 216 TTTCTTCCGTCAACTCTTAAACACGTCA-TAT-ATTACTTGTTCTTTTGTTG-TG-GGAA 271
||||||||| |||||| | ||| || | | | | | ||| | | || | |||
Sbjct 240 TTTCTTCCGCCAACTCGT-CACAGGTGAGTTTGAGAAATTG-GC-AAGGGTGACGATGAA 296
Query 272 AAGTGAGGTTAACGGGAATACAATACTCGGAGAAAGTAGTAGAATACTGTGAGGAGATCA 331
|| |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 297 AA-AGAGGTTAACGGGGATACAATACTCGGAGAAAGTAGTAGAAAACTGTGAGGAGATCA 355
Query 332 TGAAAGCGTCGGGGAAATACACAAGATCTGAAGCCAAAGCCATCGACCAATTCTTGATGG 391
|||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 356 TGAAAGCGTCAGGGAAATACACAAGATCCGAAGCCAAAGCCATTGACCAATTCTTGATGG 415
Query 392 TCTTCAAAGACCAAGATTTCCCTCCCGGCTCTTCAGTCCTCTTCGCTATCTGTCCTAAAG 451
|||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 416 TCTTCAAAAACCAAGATTTCCCTCCCGGCTCTTCAATCATCTTCGCTATCTGTCCTAAAG 475
Query 452 GCTCTCTCACAATTGCATTTTCGAAAG-GGCAGAGAGTCCCGGAAACTGGAAAATCGGTA 510
||||||||||||||||||||||||||| || ||||||||||| ||||||||||| ||||
Sbjct 476 GCTCTCTCACAATTGCATTTTCGAAAGAGG-AGAGAGTCCCGAAAACTGGAAAAGCGGTT 534
Query 511 ATCAAGAACAAGTTGTTGGGTGAGGCAGTTCTTGAGTCGATGATTGGGAAGAATGGTGTA 570
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 535 ATCAAGAATAAGTTGTTGGGTGAGGCAGTTCTTGAGTCGATGATAGGGAAGAATGGTGTA 594
Query 571 TCCCCTGCAACCAGGAAGAGCCTCGCTGAGAGATTATCTAAGCTGATGAACAACAAAGAC 630
|||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 595 TCCCCTGCGACAAGGAAGAGCCTCGCTGAGAGATTATCTAAGCTGATGAACAAAAAAGAC 654
Query 631 CCGCACAATGGAGCTAGCGACA-CAGTTGCTACAAAGAATT 670
||| |||| | ||||| || || | ||||||||||| ||||
Sbjct 655 CCGTACAACGAAGCTAACGTCAAC-GTTGCTACAAAAAATT 694
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32501493109
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5