BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918566
Length=1767
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66130.1 | Symbols: ATRAD17, RAD17 | RADIATION SENSITIVE 17 ... 2671 0.0
> AT5G66130.1 | Symbols: ATRAD17, RAD17 | RADIATION SENSITIVE 17
| chr5:26434064-26437222 FORWARD LENGTH=2103
Length=2103
Score = 2671 bits (1446), Expect = 0.0
Identities = 1654/1752 (94%), Gaps = 23/1752 (1%)
Strand=Plus/Plus
Query 38 ATAACTTAAGGTCATCGCGTTCTAATGCCAAGTCCAAACCCAGGTCCTCTGCTGCTACCA 97
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 222 ATAACTTAAGGTCATCGCGTTCTAATGCCAAGTCGAAACCCAGGTCCTCTGCTGGTACCG 281
Query 98 CAACCAATCCTAGAGCGTCAAAGAGAGCTCGACTTTC-----C----G-G--T------G 139
|||| |||||||||||||||||||||||||| ||||| | | | | |
Sbjct 282 CAACGAATCCTAGAGCGTCAAAGAGAGCTCGCCTTTCGGGTGCTAGTGCGACTCAAGAAG 341
Query 140 ---CGAGTCTTGTAGATAAGATTAGATTGTCTTTCGAAGATTTTGATGAAGCTTTAAGCG 196
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 342 ACTCGAGTCTTGTAGATAAGATTAGATTGTCTTTCGAAGATTTCGATGAAGCTTTAAGCG 401
Query 197 GCTTCAAGGTCTCTTCTGGTTATGAAAGGAGCAAGAATACCGATTTATGGGTTGATAAAT 256
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 402 GCTTCAAGGTATCTTCTGGTTATGAAAGGAGCAAGAATACCGATTTGTGGGTTGACAAAT 461
Query 257 ACAGGCCTCGCACCTTGGAAGAGCTTGCTGTTCACAAGAAGAAGGTTGAAGAAGTCAAAT 316
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 462 ACAGGCCTCGCACCTTGGAAGAGCTTTCTGTTCACAAGAAGAAGGTTGACGAAGTCAAAT 521
Query 317 TGTGG-TTCGAGGAAAGTTTGGATTTCTCAAAGGATGGTTTAAGGAATAATGTTCTACTA 375
||||| ||| |||||||||||||||||| |||| |||||||||||||||| |||||||||
Sbjct 522 TGTGGTTTC-AGGAAAGTTTGGATTTCTTAAAGAATGGTTTAAGGAATAACGTTCTACTA 580
Query 376 GTCACAGGACAAGCTGGAGTCGGAAAATCTGCTACCATCCATTTGATTGCCTCTATCCTT 435
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 581 GTCACAGGACAAGCTGGAGTCGGAAAATCTGCTACCATCCATTTGATTACGTCTATCCTT 640
Query 436 GGAGTCACAGTGTATGAGTGGAACGCTCCTATTCCTACTATCTGGCAAGAACATGTGCAC 495
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 641 GGAGTCACAGTGCATGAGTGGAACGCTCCTATTCCTACCATCTGGCAAGAACATGTGCAC 700
Query 496 AACTCTAGTTCAGGACTGAAGTACACGTCGAAGCTGGATGAGTTTGAAAACTTTGTCGAG 555
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 701 AACACTAGTTCAGGACTGAAGTACACGTCGAAGCTGGATGAGTTTGAAAACTTTGTTGAG 760
Query 556 AGTACTAGGAAATACGGAGTGATGGCTTCATCAAGTACTGAGGGAATAAAGGCGCCCGTT 615
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 761 AGTACTAGGAAATACGGAGTAATGGCTTCATCAAGTACTGACGGAATAAAGGCGCCCGTT 820
Query 616 GTTCTTTTGATTGATGACCTTCCTCTAGCCAATGGGAGGCATGCTTGTGAAAGGCTGCAA 675
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 821 GTTCTTTTGATTGATGACCTTCCTCTAGCCAATGGGAGGCATGCTTTTGAAAGGCTGCAA 880
Query 676 AACTGCTTACTTCTATTGGTGAGATCAACGCAGATTCCAACAGTGATATTAATCACTGAC 735
|| ||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 881 AATTGCCTACTACTATTGGTGAAATCAACGCAGATTCCAACAGTGATATTAATCACTGAC 940
Query 736 TACGATAAAGCGGACTCTTCTGACCAGACTGCGCGAAGCATGGAGGACGCACAGTCATCT 795
|| |||| ||||||||||||||||||||||| ||| ||||||||||| |||||||||||
Sbjct 941 CACAATAACGCGGACTCTTCTGACCAGACTGCACGACGCATGGAGGACACACAGTCATCT 1000
Query 796 CTTGAGCGAGCAGGAGCTTTAAAGGTCGCTTTCAATCCCATCACGAAGAACTCAATTAAA 855
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1001 CTTGAGCGAGCAGGGGCTTTAAAGGTTGCTTTCAATCCCATCACGAAGAACTCAATTAAA 1060
Query 856 AAGGCACTTCAGAGAATATGTAGGGAAGAGCATTGTAAGGTAACGACTATGGAGATTGAT 915
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1061 AAGGTACTTCAGAGAATATGTAGGGAAGAGCATTGTAAGGTAACAACTATGGAGATTGAT 1120
Query 916 CAGATGGCGAGTGCCAGTGGAGGAGACATCAGACATGCTATTACCTCTTTGCAACTCTTC 975
|||||||| | ||| |||||||| |||||||||||||||||||| |||||||| ||||||
Sbjct 1121 CAGATGGCAACTGCAAGTGGAGGCGACATCAGACATGCTATTACATCTTTGCAGCTCTTC 1180
Query 976 TCCGTTAAGCCAGACCTAAATCATACTAAGATAAAATCACCACGGCCTGGCATGGATGAC 1035
|||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 1181 TCCGTTAAGCCAGAGCTAAATCATACTAAGATAAAATCACCAAGGCCTGGCATGGAAGAC 1240
Query 1036 AGTTATCATGGAAACGAGCAGACAATGTACAATGGTTTGGATAGTGGAATATCTTCCTGT 1095
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1241 AATTATCATGGAAACGAGCAGACAATGTACAGTGGTTTGGATAGTGGAATATCTTCCTGT 1300
Query 1096 TTTGGTAGAGATGAGACCCTTTCGTTGTTTCACGCTCTGGGCAAGTTTCTCCACAACAAA 1155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1301 TTTGGTAGAGATGAGACCCTTTCGTTGTTTCACGCTCTGGGCAAGTTTCTCCACAACAAA 1360
Query 1156 AGAGAGACTGATAATGTCATTGTATCAGATTGCAGCAACTCTCTTGTTCATGACGAATTT 1215
|||||||| |||||||||||| ||||||| ||||||| |||||||||||||||||| |||
Sbjct 1361 AGAGAGACGGATAATGTCATTATATCAGAGTGCAGCAGCTCTCTTGTTCATGACGAGTTT 1420
Query 1216 GCGAGGTTGCCACTGAAAATGGATGCGCCGGAGAAGGTTCTCAGCCAAGCTCATGGACAG 1275
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1421 GCAAGGTTGCCACTGAAAATGGATGCGCCGGAGAAGGTTCTCAGCCAAGCTCATGGACAG 1480
Query 1276 GCAGGGCGGGTTGTGGATTTTCTGCATGAAAATGTGCTAGATTTTGTGAGTGAGGGAGCC 1335
|| |||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||
Sbjct 1481 GCGGGGCGGGTTGTGGATTTTCTACATGAAAATGTGTTAGATTTTGTGAGTGACGGAGCC 1540
Query 1336 ATAGAAGATGCCTGGTGTGTTTCTTCGTATTTGGCGGATGCTGATCTCCTTCTCGCTGAT 1395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1541 ATAGAAGATGCCTGGTGTGTTTCTTCGTATTTGGCGGATGCTGATCTCCTTCTCGCTGAT 1600
Query 1396 TTAAGAGGAAAGATGAGTGGGCATAATAAAACAGAGGATGTTTCACAGTCAGCCGGTGCC 1455
||||||||||||||||||| ||||| || |||||||||||| |||||||||||||||||
Sbjct 1601 ATAAGAGGAAAGATGAGTGGACATAACAACACAGAGGATGTTCCACAGTCAGCCGGTGCC 1660
Query 1456 TCGGTTGCTGTCCGTGGTGTGTTGTATGGAAACAAGCAGCCATGTTCATCCAGATGGCAC 1515
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1661 TCGGTTGCTGTTCGTGGTGTGTTGTATGGAAACAAGCAGCCATGTTCATCCAGATGGCAC 1720
Query 1516 GTGATTCGAAAGCCAAAACTCTGGCAAGTGGAGCAATCCTCAATACAAACAAAGAAGAAT 1575
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1721 GTGATTCGGAAGCCAAAACTCTGGCAAGTGGAGCAATCCTCAATACAAACAAAGAAGAAT 1780
Query 1576 CTGAGAGAGCAGAGGAACATAAGCTATGAGGGGTCAAGGGTGGCAGATATATCAGTGATG 1635
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1781 CTGAGAGAGCAGAGGAACATAAGCTATGAGGGGTCAAGAGTGGCAGATATATCAGTGATG 1840
Query 1636 GCCACAGAGTATAGCCCCGTGCTGAAATGGCTTAGTTACAGGGCATCTCCAGATGCGTTT 1695
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1841 GCCACAGAGTATAGCCCCGTGCTGAAATGGCTTAGCTACAGGGCATCTCCAGATGCGTTT 1900
Query 1696 GCAGGAATGGGTGAAGAGACGGATGAGGAGGAGAGTGAAATTTCTGAAGACGATGAAATA 1755
| |||||||| |||||||| ||||||||||| ||||| ||||||||||| |||||||||
Sbjct 1901 CCGGGAATGGGCGAAGAGACAGATGAGGAGGACAGTGATATTTCTGAAGATGATGAAATA 1960
Query 1756 CAAGATTGGTGA 1767
||||| ||||||
Sbjct 1961 CAAGACTGGTGA 1972
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87399148845
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5