BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918583
Length=1188
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65980.1 | Symbols: | Auxin efflux carrier family protein |... 1984 0.0
> AT5G65980.1 | Symbols: | Auxin efflux carrier family protein
| chr5:26392444-26394232 FORWARD LENGTH=1188
Length=1188
Score = 1984 bits (1074), Expect = 0.0
Identities = 1151/1189 (97%), Gaps = 2/1189 (0%)
Strand=Plus/Plus
Query 1 ATGGGTTTCTTAGAGCTATTGGAGGTGGCTTCAATGCCAATCGTTCAAGTTCTTCTTATC 60
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGTTTCTTAGAGTTGTTGGAGGTGGCTTCAATGCCAATCGTTCAAGTTCTTCTTATC 60
Query 61 AGCGTCCTTGGCGCTTTCTTGGCAACCGATTACTGCTCTCTTCTTTCTGCTGACACCCGA 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 AGCGTCCTTGGCGCTTTCTTGGCAACCGATTACTGCTCTCTTCTCTCTGCTGACACCCGA 120
Query 121 AGATCCGTGAACAAGCTCGTCTTCGTGGTCTTCACCCCCTGCATCATGTTTGCCAACCTT 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 121 AGATCCGTGAACAAGCTCGTCTTCGTGGTATTCACCCCCTGCATCATGTTTGCCAACCTT 180
Query 181 GCCGAGACTGTCACATTGCAGGACATTATTTCATGGTGGTTTATGCCCATAAATGTTGGA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GCCGAGACTGTCACATTGCAGGACATTATTTCATGGTGGTTTATGCCCATAAATGTTGGA 240
Query 241 ATCACCTTTCTAGTAGGAGGCATTCTTGGATGGTTGGTGGTCAAGCTCCTGAACCCCAAA 300
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 241 ATCACCTTTCTAGTAGGAGGCATTCTTGGATGGTTGGTGGTCAAGCTACTGAACCCCAAA 300
Query 301 CCTCAACTTCATGGCCTCATAATTGCTACTTGTGCCTCAGGCAATATGGGAAACCTTATG 360
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 301 CCTCAACTTCATGGCCTCATAATTGCTACTTGTGCCTCAGGCAATATGGGGAACCTTATG 360
Query 361 CTTATTCTGGTCCCTGCCATCTGTGACGAGGAAGGCAGTCCTTTTGGGAATCGGAGTGTC 420
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 361 CTTATACTGGTCCCTGCCATCTGTGACGAGGAAGGCAGTCCTTTTGGGAATCGTAGTGTC 420
Query 421 TGCAGATCCATCGGGCTCTCCTACGCATCTTTCTCTATGGCCCTCGGGGGTTTCTACATA 480
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TGCAGATCCATTGGGCTCTCCTACGCATCTTTCTCTATGGCCCTCGGGGGTTTCTACATA 480
Query 481 TGGACGTACAGTTACCAACTGGTAAGAAGCTCTGCTACACAGTTTAGAGCTCTTGAAGCC 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TGGACGTACAGTTACCAACTGGTAAGAAGCTCTGCTACACAGTTTAGAGCTCTTGAAGCC 540
Query 541 GCCGGGTTGGTCAAGTCTCCCAACAAGGACATCGACTCTGATCCCCACACTCTTCTCCTC 600
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 541 GCCGGGTTGGTCAAGTCTCCCAACAAGGACATCGACTCTGATCCCCACGCTCTTCTCCTC 600
Query 601 AAGCCGCACCAAAACCAGGACCTTGAGATCCAAGGCAAACAAAAGGTGTCTACCGGGACA 660
||||||||||||||||| |||||||| ||||||||||||||||| ||||||||| |||||
Sbjct 601 AAGCCGCACCAAAACCAAGACCTTGAAATCCAAGGCAAACAAAAAGTGTCTACCAGGACA 660
Query 661 TACATCAAGGACTTGCTCCATCAGATTCTTGAGGAACTCTTCGCACCACCCACCATTGGT 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TACATCAAGGACTTGCTCCATCAGATTCTTGAGGAACTCTTCGCACCACCCACCATTGGT 720
Query 721 GCCATTCTTGGCTTCGTTTTCGGAGCAACAAATTGGCTAAGGAATCTTATAATCGGGGAG 780
||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 721 GCCATTCTTGGCTTCGTCTTCGGAGCAACCAATTGGCTAAGGAATCTTATAATTGGGGAG 780
Query 781 AATGCCCCGTTGCGAGTGATCCAAGACTCAGTAAAGCTACTTGGGGACGGCACAATTCCT 840
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 781 AATGCCCCGTTGCGAGTGATCCAAGACTCAGTAAAGCTACTTGGGGAGGGCACAATTCCT 840
Query 841 TGCATAACACTCATACTGGGGGGCAACCTGATCCAGGGTCTGCGTTCCTCAGCCGTGAAG 900
||||| ||||||||||||||||| |||||||| |||||||||||||| ||||| ||||||
Sbjct 841 TGCATCACACTCATACTGGGGGGAAACCTGATTCAGGGTCTGCGTTCATCAGCTGTGAAG 900
Query 901 ACATCAGTGATTGTGGGAGTGATC-TGTGTGCGCTATATCATCCTCCCCGTGGTGGGAGT 959
| ||||||||||||||||||||| | ||||||||||||| |||| ||||||||||||||
Sbjct 901 AAATCAGTGATTGTGGGAGTGATAAT-TGTGCGCTATATCCTCCTTCCCGTGGTGGGAGT 959
Query 960 CGGAGTGGTCCAATTAGCAGGAAATCTAGGGTATCTTCCTCCAGACCCTCTCTTCCGATA 1019
||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 960 CGGGGTGGTCCAATTAGCAGGAAATCTAGGCTATCTTCCTCCAGACCCTCTCTTTCGATA 1019
Query 1020 CGTTCTCATGCTTCAGTTCACACTGCCGCCTGCCATGAATATCAGCACAATGGCACAGCT 1079
||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||| ||
Sbjct 1020 CGTTCTCATGCTTCAGTTCGCACTACCGCCTGCCATGAATATTAGCACAATGGCACAACT 1079
Query 1080 GTTCGACGTGGCTCAAGATGAGTGCTCGGTCATCTTCTTGTGGACCTACCTGGTTGCATC 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 GTTCGACGTGGCTCAAGATGAGTGCTCGGTCATCTTCTTGTGGACCTACCTGGTTGCATC 1139
Query 1140 CTTAGCCCTCACCATCTGGTCAACCATCTTCCTCTCCATCCTCTCCTGA 1188
|||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1140 TTTAGCCCTCACCGTCTGGTCAACCATCTTCCTCTCCATCCTCTCCTGA 1188
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58333033290
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5