BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918600
Length=1410
Score E
Sequences producing significant alignments: (Bits) Value
AT3G13730.1 | Symbols: CYP90D1 | cytochrome P450, family 90, su... 2185 0.0
> AT3G13730.1 | Symbols: CYP90D1 | cytochrome P450, family 90,
subfamily D, polypeptide 1 | chr3:4497976-4500920 REVERSE LENGTH=1914
Length=1914
Score = 2185 bits (1183), Expect = 0.0
Identities = 1338/1413 (95%), Gaps = 10/1413 (1%)
Strand=Plus/Plus
Query 3 GATCAACGTTCTCAGATCATCCCCAGC-T--ACGATAATACTTAAAGAGT-ATCAGGTTA 58
|||||||| |||||||||||||||||| | | || || |||||| || | |||| ||||
Sbjct 153 GATCAACGGTCTCAGATCATCCCCAGCTTCAAAGAAAAAACTTAATGA-TCATCATGTTA 211
Query 59 TTTCTCACATTCCCGGACC-AAGTTTTCCACAAGGAAGCTTGGGATGGCCTGTCATCGGT 117
|| || | || |||||| ||| |||||||| ||||||||||||||||| |||||||||
Sbjct 212 CATCCCAGAGTCACGGACCAAAG-TTTCCACACGGAAGCTTGGGATGGCCCGTCATCGGT 270
Query 118 GAAACCATCGAGTTCGTCTCTTCTGCTTACTCAGACCATCCTGAGAGTTTCATGGACAAG 177
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 271 GAAACCATCGAGTTCGTCTCTTCTGCTTACTCAGACCGTCCTGAGAGTTTCATGGACAAG 330
Query 178 CGACGAGTCATGTATGGGAGAGTCTTTAAGTCGCATATATTTGGAACGGCGACGATCGTA 237
|| || |||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 331 CGTCGTCTCATGTATGGGAGAGTGTTTAAGTCGCATATTTTTGGAACGGCGACGATCGTG 390
Query 238 TCGACGGATGCTGAAGTGAACAGAGCCGTTTTACAGAGCGACTCGACGGCTTTCGTGCCG 297
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 391 TCGACGGATGCTGAAGTGAACAGAGCCGTTTTACAGAGCGACTCGACAGCTTTCGTGCCG 450
Query 298 TTTTACCCGAAAACGGTGAGGGAGCTAATGGGAAAATCGTCGATACTTCTGATCAACGGG 357
|||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 451 TTTTACCCAAAAACGGTAAGGGAGCTAATGGGAAAATCGTCGATACTTCTTATCAACGGG 510
Query 358 AGTTTACATAGAAGGTTCCATGGACTAGTCGGTTCTTTCTTAAAGTCACCACTTCTCAAA 417
|||||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 511 AGTTTACATAGACGGTTCCATGGATTAGTCGGTTCTTTCTTAAAGTCGCCACTTCTCAAA 570
Query 418 GCTCAAATCGTTAGAGACATGCACAGGTTTTTGTCTGAATCCATGGATCTATGGTCCGAG 477
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 571 GCTCAAATCGTTAGAGACATGCACAAGTTTTTGTCGGAATCCATGGATCTATGGTCCGAG 630
Query 478 GACCAACCAGTTCTCCTCCAAGACGTCTCCAAGACTGTTGCATTCAAAGTACTTGCCAAG 537
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 631 GACCAACCTGTGCTCCTCCAAGACGTCTCCAAGACTGTTGCATTCAAAGTACTTGCCAAG 690
Query 538 GCATTGATAAGTGTAGAGAAAGGAGAAGAGTTAGAAGAGTTAAAGAAAGAGTTTGAAAAT 597
||||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||
Sbjct 691 GCATTGATAAGTGTAGAGAAAGGAGAAGATTTAGAAGAGCTAAAGAGAGAGTTTGAAAAT 750
Query 598 TTCATATCAGGACTCATGTCATTACCAATTAACTTCCCTGGAACCCAACTTCATAGATCT 657
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 751 TTCATATCAGGACTCATGTCATTACCAATTAACTTCCCTGGAACGCAACTCCATAGATCT 810
Query 658 CTCCAAGCTAAGAAGAATATGGTGAAGCAAGTTGAAAGAATCATAGAAGGCAAAATTAGG 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 811 CTCCAAGCTAAGAAGAATATGGTGAAGCAAGTTGAAAGAATCATAGAAGGCAAAATTAGG 870
Query 718 AGTGCAAAGAACAAAGAAGAAGATGGTACTGTGATTGCTAAGGATGTTGTGGATGTGTTG 777
| |||||||||| || |||||| | | ||| ||||| |||||||||||||||||||||
Sbjct 871 AAAACAAAGAACAAGGAGGAAGAT-G-A-TGTTATTGCAAAGGATGTTGTGGATGTGTTG 927
Query 778 CTTAAGGACTCAAGTGAATATTTAACTCACAATTTGATTGCTAACAATATGATTGACATG 837
|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 928 CTTAAGGACTCAAGTGAACATTTAACTCACAATTTGATTGCTAACAATATGATCGACATG 987
Query 838 ATGATCCCTGGCCACGATTCTGTCCCCGTCCTCATCACCCTCGCCGTCAAATTCCTCTCT 897
|||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||
Sbjct 988 ATGATCCCTGGCCACGATTCTGTCCCTGTCCTCATTACCCTTGCCGTCAAATTCCTCTCT 1047
Query 898 GATTCTCCCGCTGCCCTCAATCTCCTAACGGAAGAAAACATGAAGCTGAAAAGTTTGAAG 957
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1048 GATTCTCCTGCTGCCCTCAATCTCCTAACGGAAGAAAACATGAAGCTGAAAAGTTTGAAG 1107
Query 958 GAATTGACAGGAGAGCCACTATATTGGAATGACTATTTGTCGTTACCTTTTACACAAAAG 1017
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1108 GAATTGACAGGAGAGCCACTATATTGGAATGACTACTTGTCGTTACCTTTTACACAAAAG 1167
Query 1018 GTCATTACAGAGACACTGAGAATGGGAAATGTTATAATTGGAGTGATGAGAAAGGCGATG 1077
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1168 GTGATTACAGAGACACTGAGAATGGGAAATGTTATAATTGGAGTGATGAGAAAGGCGATG 1227
Query 1078 AAAGATGTTGAAATAAAAGGATATGTGATACCAAAAGGATGGTGCTTCTTGGCCTATCTC 1137
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1228 AAAGATGTTGAAATAAAAGGATATGTGATACCAAAAGGATGGTGTTTCTTGGCCTATCTC 1287
Query 1138 AGATCAGTCCATCTTGATAAACTTTACTACGACTCTCCCTACAAATTTAATCCCTGGAGA 1197
|||||||| ||||||||||| ||||| || || |||||||||||||||||||||||||||
Sbjct 1288 AGATCAGTTCATCTTGATAAGCTTTATTATGAGTCTCCCTACAAATTTAATCCCTGGAGA 1347
Query 1198 TGGCAAGAAAGGGACATGAACACGAGTAGTTTCAGTCCTTTTGGAGGTGGTCAGAGATTG 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1348 TGGCAAGAAAGGGACATGAACACGAGTAGTTTCAGTCCTTTTGGAGGTGGTCAGAGATTG 1407
Query 1258 TGCCCTGGTCTCGATTTGGCTCGTCTTGAAGCTTCAATCTTTCTTCACCACCTTGTCACT 1317
|||||||||||||||||||||||||||||| ||||| | ||||||||||| |||||||||
Sbjct 1408 TGCCCTGGTCTCGATTTGGCTCGTCTTGAAACTTCAGTTTTTCTTCACCATCTTGTCACT 1467
Query 1318 CGCTTCAGATGGATAGCAGAAGAAGATACAATCATAAATTTTCCAACGGTGCATATGAAG 1377
|||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||
Sbjct 1468 CGCTTCAGATGGATAGCAGAAGAAGACACAATCATAAACTTCCCAACGGTGCATATGAAG 1527
Query 1378 AACAAATTACCCATTTGGATCAAAAGAATATAA 1410
|||||||||||||||||||||||||||||||||
Sbjct 1528 AACAAATTACCCATTTGGATCAAAAGAATATAA 1560
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69477554280
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5