BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918615
Length=573
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39150.1 | Symbols: | DNAJ heat shock N-terminal domain-con... 896 0.0
AT2G21510.1 | Symbols: | DNAJ heat shock N-terminal domain-con... 520 8e-147
> AT4G39150.1 | Symbols: | DNAJ heat shock N-terminal domain-containing
protein | chr4:18233485-18236064 REVERSE LENGTH=1255
Length=1255
Score = 896 bits (485), Expect = 0.0
Identities = 545/574 (95%), Gaps = 3/574 (1%)
Strand=Plus/Plus
Query 1 ATGGTGAAGGAGAGTGAGTACTATGACATATTAGGCGTCAAGATTGACGCGTCTGGTGCT 60
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 52 ATGGTGAAGGAGAGTGAGTACTACGACATATTAGGCGTCAAGATTGACGCCTCTGGTGCT 111
Query 61 GAGATTAAGAAGGCTTATTATGTTAAAGCAAGGCAAGTTCATCCAGACAAGAACCATGGT 120
||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 112 GAGATTAAGAAAGCTTATTATGTTCAAGCAAGGCAAGTTCATCCAGACAAGAACCCTGGT 171
Query 121 GATCCTCAAGCTGCTAAAAACTTTCAGATACTAGGTGAAGCTTACCAAGTTCTTA-GCGA 179
|||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||
Sbjct 172 GATCCTCAAGCTGCTAAAAACTTTCAGATACTAGGTGAAGCTTATCAAGTTC-TAGGCGA 230
Query 180 TCCGGAGAAGCGAACAGCTTATGACAAATTTGGAAAACAAGGGGTTCAACAGGATGCAAT 239
|||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 231 TCCGGAGAAGCGTACAGCTTATGACAAATATGGAAAAGAAGGGGTTCAACAGGATGCAAT 290
Query 240 GGTTGATCCTGCAGCTGTGTTTGGTATGCTCTTTGGTAGCGAGCTCTTTGAGGAGTACGT 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 291 GGTTGATCCTGCAGCTGTGTTTGGTATGCTCTTTGGTAGCGAGCTCTTTGAGGATTACGT 350
Query 300 TGGGCAACTTGCACTTGCTTCAATAGCCTCAATCGATGCTGAATTAGAATCTTATGAGCC 359
|||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 351 TGGGCAACTTGCCCTTGCTTCAGCAGCCTCAATCGATGCTGAATTAGAATCGTATGAGCC 410
Query 360 TGAGATTAGAAAACAGATGCTTCGGGAAAAGATCAAAGCGATGCAAAACGATAGAGTAGA 419
||||||||||||||||||||||| |||||||||||||||||| ||||| || ||||||||
Sbjct 411 TGAGATTAGAAAACAGATGCTTCAGGAAAAGATCAAAGCGATACAAAAGGACAGAGTAGA 470
Query 420 CAAGCTCGTCGCTACACTGAAAATCAAACTCGAACCATTCGTGGAAGGACAAACTGATGA 479
|||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 471 CAAGCTCGTCACTACACTGAAAATCAAACTTGAACCATTCGTGGAAGGACAAACCGATGA 530
Query 480 ATTTGTGAACTGGGCCACCGCAGAGGCAAAACGGCTTTCTACAGCTGGTTTTGGTGAGGC 539
|||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 531 ATTTGTAAATTGGGCCACCGCAGAGGCAAAACGGCTTTCAACAGCTGGTTTTGGTGAGGC 590
Query 540 AATGCTTCACACCGCTTGGATACATTTACACTAG 573
|||||||||||| | |||| ||||||||||||||
Sbjct 591 AATGCTTCACACAG-TTGGTTACATTTACACTAG 623
> AT2G21510.1 | Symbols: | DNAJ heat shock N-terminal domain-containing
protein | chr2:9210655-9213058 REVERSE LENGTH=1324
Length=1324
Score = 520 bits (281), Expect = 8e-147
Identities = 479/575 (83%), Gaps = 11/575 (2%)
Strand=Plus/Plus
Query 1 ATGGTGAAGGAGAGTGAGTACTATGACATATTAGGCGTCAAGATTGACGCGTCTGGTGCT 60
|||||||| |||| ||| ||||| || || ||||||||||| | ||| || || | ||||
Sbjct 98 ATGGTGAAAGAGACTGAATACTACGAGATCTTAGGCGTCAAAACTGATGCTTCAGATGCT 157
Query 61 GAGATTAAGAAGGCTTATTATGTT-AAAGCAAGGCAAGTTCATCCAGACAAGAACCATGG 119
|||||||| |||||||| || || ||||||||| ||||||||||||||||||||| |||
Sbjct 158 GAGATTAAAAAGGCTTACTA-CTTAAAAGCAAGGAAAGTTCATCCAGACAAGAACCCTGG 216
Query 120 TGATCCTCAAGCTGCTAAAAACTTTCAGATACTAGGTGAAGCTTACCAAGTTCTTAGCGA 179
|| |||||||||||||||||||||||| | ||||||| ||||| || ||||| ||| |
Sbjct 217 AGACCCTCAAGCTGCTAAAAACTTTCAGGTTTTAGGTGAGGCTTATCAGGTTCTAAGCAA 276
Query 180 TCCGGAGAAGCGAACAGCTTATGACAAATTTGGAAAACAAGGGGTTCAACAGGATGCAAT 239
|||||| |||||| ||||||||||||||| ||| ||| ||||||| ||||||||||||||
Sbjct 277 TCCGGATAAGCGAGCAGCTTATGACAAATATGGCAAAGAAGGGGTCCAACAGGATGCAAT 336
Query 240 GGTTGATCCTGCAGCTGTGTTTGGTATGCTCTTT-GGTAGCGA-GCTCTTTGAGGAGTAC 297
|||||||||||||||||| ||||||||||| ||| || ||||| | ||||||| || |||
Sbjct 337 GGTTGATCCTGCAGCTGTATTTGGTATGCT-TTTCGGAAGCGAAG-TCTTTGAAGAATAC 394
Query 298 GTTGGGCAACTTGCACTTGCTTCAATAGCC-TCAATCGATGCTGAATTAGAATCTTATGA 356
||||| || ||||||||||||| | | | | || ||||| ||||| |||||||| ||||
Sbjct 395 GTTGGCCAGCTTGCACTTGCTT-ATTTGGCATCTATCGAAGCTGACTTAGAATCACATGA 453
Query 357 GCCTGAGATTAGAAAACAGATGCTTCGGGAAAAGATCAAAGCGATGCAAAACGATAGAGT 416
||||| || ||||| || ||||||| || ||||||||||| | ||||| || || |
Sbjct 454 CCCTGAAATCAGAAAGCAAATGCTTCAAGACAAGATCAAAGCTCTTCAAAAGGAGAGGGA 513
Query 417 AGACAAGCTCGTCGCTACACTGAAAATCAAACTCGAACCATTCGTGGAAGGACAAACTGA 476
||||||||||| ||||||| |||||| |||||| ||||| || |||||| ||||||| ||
Sbjct 514 AGACAAGCTCGCCGCTACATTGAAAAACAAACTTGAACCCTTTGTGGAAAGACAAACAGA 573
Query 477 TGAATTTGT-GAACTGGGCCACCGCAGAGGCAAAACGGCTTTCTACAGCTGGTTTTGGTG 535
||||||| | ||| ||||| | || ||||||||| ||||||||| | || |||||||| |
Sbjct 574 TGAATTTATCGAA-TGGGCAAACGAAGAGGCAAAGCGGCTTTCTTCTGCCGGTTTTGGCG 632
Query 536 AGGCAATGCTTCACACCGCTTGGATACATTTACAC 570
|||||||| | || || |||| |||||||||||
Sbjct 633 AGGCAATGATGCATACTA-TTGGTTACATTTACAC 666
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27528312556
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5