BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg918617

Length=384
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G45730.1 | Symbols:  | eukaryotic initiation factor 3 gamma ...   617    2e-176


> AT2G45730.1 | Symbols:  | eukaryotic initiation factor 3 gamma 
subunit family protein | chr2:18836264-18839160 REVERSE LENGTH=1633
Length=1633

 Score =  617 bits (334),  Expect = 2e-176
 Identities = 365/380 (96%), Gaps = 1/380 (0%)
 Strand=Plus/Plus

Query  1    ATGGAACTCGATAAAGATCAGACAGTCATGTCGGAGGATAAAAAGCCTCAAGTTCCAAAT  60
            ||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  38   ATGGAACTCAATAAGGATCAGACAGTCATGTCGGAGGATAAAAAGCCTCAAGATCCAAAT  97

Query  61   CCCAGATTTGCTTGCGAAGGTTGCAGCGTTTTGCTCGACGTCAACGATGGTGACCGTCTC  120
            |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct  98   CCCAGATTTGCTTGCGAAGGTTGCAGCGTTCTGCTCGACATCAACGATGGTGACCGTCTC  157

Query  121  GTCTTCGCTCGTTTATCTGGTGGCGCTATATTAAAAATTGGGAATAAGAATTATTCTTTA  180
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  158  GTCTTCGCTCGTTTATCTAGTGGCGCTATATTAAAAATTGGGAATAAGAATTATTCTTTA  217

Query  181  AAGCCATTGATCGGAGCTCCGTTTGGATCTCTGTTCCAAGTCGAAACCGGAGAAGATGGT  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  218  AAGCCATTGATCGGAGCTCCGTTTGGATCTCTGTTCCAAGTCGAAACCGGAGAAGATGGT  277

Query  241  TCTTTCCTCTCTCGCATTCTTCCCATTAAACAAGAAAATAGCAGTAATAATGTTATGGAG  300
            ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| 
Sbjct  278  TCTTTCCTCTCTCGCATTCTTCCCATTAAACAAGAAAGTAACAGTAATAATGTTATGGAC  337

Query  301  GATTCGAGAGATAATCGGGAAATCGTCGACACCAATGAAGCTCAGAACCTTACTGGTGAA  360
            ||||||||||||||||| |||||||||||||  |||||||||||||| ||||||||||||
Sbjct  338  GATTCGAGAGATAATCGAGAAATCGTCGACAATAATGAAGCTCAGAATCTTACTGGTGAA  397

Query  361  GAAAT-GAAGCCATGCGGAG  379
            ||||| ||||| ||||||||
Sbjct  398  GAAATTGAAGCTATGCGGAG  417



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18096389640


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5