BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918622
Length=1263
Score E
Sequences producing significant alignments: (Bits) Value
AT2G45100.1 | Symbols: | Cyclin/Brf1-like TBP-binding protein ... 1711 0.0
AT3G09360.1 | Symbols: | Cyclin/Brf1-like TBP-binding protein ... 893 0.0
AT2G01280.1 | Symbols: MEE65 | Cyclin/Brf1-like TBP-binding pro... 472 5e-132
AT1G30455.1 | Symbols: | transcription regulators;translation ... 272 5e-72
> AT2G45100.1 | Symbols: | Cyclin/Brf1-like TBP-binding protein
| chr2:18595348-18598438 REVERSE LENGTH=1820
Length=1820
Score = 1711 bits (926), Expect = 0.0
Identities = 1079/1150 (94%), Gaps = 21/1150 (2%)
Strand=Plus/Plus
Query 1 ATGGTGTGGTGTAACCATTGTGGGAAGAACGTTCCCGGAATACGCCCCTATGATGGTGCA 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 147 ATGGTGTGGTGTAAACATTGTGGGAAGAACGTTCCCGGAATACGCCCCTATGATGCTGCA 206
Query 61 TTGTCATGTGATTTATGTGGCAGGATTTTGGAGAATTTCAATTTTTCTACTCAAGTTACT 120
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 207 TTGTCATGTGATTTATGTGGCAGGATTTTGGAGAATTTCAATTTTTCTACTGAAGTTACA 266
Query 121 TTCGTTAAGAATGCAGCTGGACAGAGCCAAGCTTCTGGTAACATAGTGAAGAGTGTTCAG 180
|||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 267 TTCGTTAAGAATGCTGCTGGACAGAGCCAAGCTTCTGGTAACATACTCAAGAGTGTTCAG 326
Query 181 AGTGGGATGTCAAGCTCACGTGAAAGGAGAATCAGAATAGCTA-TAGATGAGCTTATGAA 239
||||| |||||||||||||||||||||| |||||||| ||||| | ||||||||||||||
Sbjct 327 AGTGGCATGTCAAGCTCACGTGAAAGGATAATCAGAAAAGCTACT-GATGAGCTTATGAA 385
Query 240 TTTGAGAGACGCTTTGGGAATTGGTGATGACAGAGATGATGTTATTGTCATGGCTTCTAA 299
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 386 TTTGAGAGATGCTTTGGGAATTGGTGATGACAGAGATGATGTTATTGTCATGGCTTCTAA 445
Query 300 TTTCTTTAGAACGGCACTTGATCTTAATTTCACTAAAGGCCGTAG-AAGCGAGCTAGTAC 358
||||||||||| |||||||||| ||||||||||||||||||||| || || ||||||
Sbjct 446 TTTCTTTAGAATTGCACTTGATCATAATTTCACTAAAGGCCGTAGCAA-AGAACTAGTAT 504
Query 359 TGTCTTCATGTCTCTACTTGTCTTGCAGGCAATTAAAATTTGCGGTTCTTCTTATTCATT 418
| |||||||||||||||||| ||||||||||||| ||||| ||||||||||||||| |||
Sbjct 505 TCTCTTCATGTCTCTACTTGACTTGCAGGCAATTCAAATTGGCGGTTCTTCTTATTGATT 564
Query 419 TTTCAAGCTACCTTCGTGTTAGCGTTTACGATTTAGGTTCTGTGTATTTGCAACTCTGTG 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 565 TTTCAAGCTACCTTCGTGTTAGCGTTTACGATTTAGGTTCTGTGTATTTGCAACTCTGTG 624
Query 479 ACATGCTCTACATTACAGAAAACCACAACTACGAGAAACTTGTTGATCCTTCAATTTTCA 538
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 625 ACATGCTCTACATTACAGAAAACCACAACTATGAGAAACTTGTTGATCCTTCAATTTTCA 684
Query 539 TTCCTGGATTCACAAACATGTTATTGAAAGGTGCACACCGTAAGAAAGTCGTGGGAACAG 598
||||| ||||| |||||||||||||||||||||||||| ||| ||| ||||| |
Sbjct 685 TTCCTCGATTCTCAAACATGTTATTGAAAGGTGCACACAATAATAAACTCGTG----C-- 738
Query 599 TCGTGGACACGGCTACAGACATTATAGCTAGTATGAAGAGAGATTGGATGCAGACCGGAC 658
| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 739 T-----A-ACGGCTACACACATTATAGCTAGTATGAAGAGAGATTGGATGCAGACCGGAC 792
Query 659 GGAAACCAAGTGGAATATGTGGAGCAGCACTCTATACAGCTGCACTTTCTCATGGTATCA 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 793 GGAAACCAAGTGGAATATGTGGAGCAGCACTCTATACAGCTGCACTTTCTCATGGTATCA 852
Query 719 AGTGCTCTAAGACAGATATCGTGAAAATTGTGCATATATGCGAAGCAACTCTAACTAAAA 778
||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 853 AGTGCTCCAAGACAGATATCGTGAACATTGTGCATATATGCGAAGCAACCCTAACTAAAA 912
Query 779 GATTGATTGAGTTTGGAAATACCGAGGCTGCAAGTTTTACTGCTGATGAGCTCAGTAAAA 838
||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 913 GATTGATTGAGTTTGGAGATACCGAGGCTGCAAGTTTGACTGCAGATGAGCTCAGTAAAA 972
Query 839 CTGAAAGAGAAAGaaaaaaaGAAACGGAATTGCGTAGTAAAAGGAATCCAA-TTTCTTAC 897
|||||||||||| || ||| | | | |||||| ||||||||||| |||| ||| ||||
Sbjct 973 CTGAAAGAGAAA-AAGAAACGG--CTGCATTGCGAAGTAAAAGGAAGCCAAATTT-TTAC 1028
Query 898 AAAGAAGGAGTAGTGCTCTGTATGCATCAAGATTGTAAACCTGTTGATTATGGATTATGT 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1029 AAAGAAGGAGTAGTGCTCTGTATGCATCAAGATTGTAAACCTGTTGATTATGGATTATGT 1088
Query 958 AAGAGCTGTTACGATGAGTTCATGAAAGTTTCTGGTGGACTTGAAGGTGGGTCGGATCCT 1017
|||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1089 GAGAGCTGTTACGATGAATTCATGACAGTTTCTGGTGGACTTGAAGGTGGGTCGGATCCT 1148
Query 1018 CCCGCCTTCCAGCGAGCAGAGAAAGAGAGAATGGAGGAAAAAGCTTCTAGAGAAGAAAAC 1077
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1149 CCCGCCTTCCAGCGAGCAGAGAAAGAGAGAATGGAGGAAAAAGCTTCTAGTGAAGAAAAC 1208
Query 1078 GACAAACAACTAAATTCGGATGGACATTCGGATGAATCAAGCACCTTGTCTGACGTTGAT 1137
||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1209 GACAAACAAGTAAATTTGGATGGACATTCGGATGAATCAAGCACCTTGTCTGACGTCGAT 1268
Query 1138 GATAGAGAGT 1147
||||||||||
Sbjct 1269 GATAGAGAGT 1278
> AT3G09360.1 | Symbols: | Cyclin/Brf1-like TBP-binding protein
| chr3:2873449-2878591 FORWARD LENGTH=2188
Length=2188
Score = 893 bits (483), Expect = 0.0
Identities = 900/1093 (82%), Gaps = 61/1093 (6%)
Strand=Plus/Plus
Query 1 ATGGTGTGGTGTAACCATTGTGGGAAGAACGTTCCCGGAATACGCCCCTATGATGGTGCA 60
||||| |||||||||||||| | |||||| ||||||||||||||||| ||||||||||||
Sbjct 215 ATGGTATGGTGTAACCATTGCGTGAAGAATGTTCCCGGAATACGCCCTTATGATGGTGCA 274
Query 61 TTGTCATGTGATTTATGTGGCAGGATTTTGGAGAATTTCAATTTTTCTACTC-AAGTTAC 119
||| ||||| |||||||||| ||||| |||||||||||| |||||||||| | |||||||
Sbjct 275 TTGGCATGTAATTTATGTGGGAGGATATTGGAGAATTTCCATTTTTCTAC-CGAAGTTAC 333
Query 120 TTTCGTTAAGAATGCAGCTGGACAGAGCCAAGCTTCTGGTAACATAGTGAAGAGTGTTCA 179
|||||||||||||| ||||||||||||||||| || ||||||||||||| |||||||||
Sbjct 334 ATTCGTTAAGAATGCTGCTGGACAGAGCCAAGCATCAGGTAACATAGTGAGGAGTGTTCA 393
Query 180 GAGTGGGATGT-CAAGCTCACGTGAAAGGAGAATCAGAATAGCTATAGATGAGCTTATGA 238
|||||||| | |||||||||||||||||||| | |||||||||| ||||||||||||||
Sbjct 394 AAGTGGGAT-TACAAGCTCACGTGAAAGGAGATTTAGAATAGCTAGAGATGAGCTTATGA 452
Query 239 ATTTGAGAGACGCTTTGGGAATTGGTGATGACAGAGATGATGTTATTGTCATGGCTTCTA 298
|||||| ||| || ||||| ||||||||||| ||||||||||| |||||||| || |||
Sbjct 453 ATTTGAAAGATGCATTGGGGATTGGTGATGAGAGAGATGATGTGATTGTCATCGCAGCTA 512
Query 299 ATTTCTTTAG-AACGGCACTTGATCTTAATTTCACTAAAGGCCGTAGAAGC-GAGCTAGT 356
| |||||| | || |||| |||| | |||||||| |||||||| |||| | || |||||
Sbjct 513 AATTCTTT-GAAATGGCAGTTGAGCAGAATTTCACGAAAGGCCGCAGAA-CTGAACTAGT 570
Query 357 ACTGTCTTCATGTCTCTACTTGTCTTGCAGGCAATT-AAAATTTGCGGTT-CTTCTTATT 414
|| | |||| || ||||||||| | |||||| |||| || | |||| ||| |||||||||
Sbjct 571 ACAGGCTTCCTGCCTCTACTTGACGTGCAGGGAATTGAACA-TTGC-GTTGCTTCTTATT 628
Query 415 CATTTTTCAAGCTACCTTCGTGTTAGCGTTTACGATTTAGGTTCTGTGTATTTGCAACTC 474
|||| |||||||||||||| ||||||||||| || ||||||||||| || || ||||||
Sbjct 629 GATTTCTCAAGCTACCTTCGAGTTAGCGTTTATGAGTTAGGTTCTGTATACTTACAACTC 688
Query 475 TGTGACATGCTCTACATTACAGAAAACCACAACTACGAGAAA-CTTGTTGATCCTTCAAT 533
||||| ||||| ||| || ||||| | || || || ||| |||||||||||||||||
Sbjct 689 TGTGAAATGCTGTACCTTGTGGAAAATCGGAATTATGA-AAAGCTTGTTGATCCTTCAAT 747
Query 534 TTTCATTCCTGGATTCACAAACATG-TTATTGAAAGGTGCACACCGTAAGAAAGTCGTGG 592
|||||| | ||||| |||||| | ||||||||| | | | || ||| | |
Sbjct 748 TTTCATGGATCGATTCTCAAACA-GCTTATTGAAA-G-G---A----AA-AAA-TAAT-- 793
Query 593 GAACA-GTCGTGGAC-ACGGCTACAGACATTATAGCTAGTATGAAGAGAGATTGGATGCA 650
|| | || |||| | || |||| ||||||||||||||||||||||||||||||||| ||
Sbjct 794 AAAGATGTTGTGG-CAACAGCTAGAGACATTATAGCTAGTATGAAGAGAGATTGGATACA 852
Query 651 GACCGGACGGAAACCAAGTGGAATATGTGGAGCAGCACTCTATACAGCTGCACTTTCTCA 710
|||||| ||||| || ||||||||||||||||||||||| || |||||||| ||||||||
Sbjct 853 GACCGGCCGGAAGCCTAGTGGAATATGTGGAGCAGCACTTTACACAGCTGCTCTTTCTCA 912
Query 711 TGGTATCAAGTGCTCTAAGACAGATATCGTGAAA-ATTGTGCATATATGCGAAGCAACTC 769
||||||||||||||||||||||||||| || ||| |||||||||||||| ||||||||||
Sbjct 913 TGGTATCAAGTGCTCTAAGACAGATATTGT-AAACATTGTGCATATATGTGAAGCAACTC 971
Query 770 TAACTAAAAGATTGATTGAGTTTGGAAATACCGAGGCTGCAAGTTTTACTGCTGATGAGC 829
| || ||| |||||||||||||||| |||| || ||| || ||| | || | ||||||
Sbjct 972 TCACCAAACGATTGATTGAGTTTGGCGATACGGATTCTGGAAATTTAAATGTTAATGAGC 1031
Query 830 TCAGTAAAACTGAAAGAGAAA-GaaaaaaaGAAACGGAATTGCGTAGTAAAAGGAATCCA 888
|||| | ||||||||| | | |||||| | || | || | ||| |||
Sbjct 1032 TCAG-A-----GAAAGAGAATCGCATAAAAGAT-C----TT---T--TACCATGAAACCA 1075
Query 889 ATTTCTTACAAAGAAGGAGTAGTGCTCTGTATGCATCAAGATTGTAAACCTGTTGATTAT 948
| || | ||||| || | ||||||||||||||||| ||| |||||||| ||| ||||
Sbjct 1076 ACCTCAAATAAAGA-GGCG--GTGCTCTGTATGCATCAGGATAGTAAACCTTTTGGTTAT 1132
Query 949 GGATTATGT-AAGAGCTGTTACGATGAGTTCATGAAA-GTTTCTGGTGGACTTGAAGGTG 1006
||| ||||| |||| ||| ||| | || ||||| ||| |||||||||||||||| ||||
Sbjct 1133 GGACTATGTGAAGA-CTGCTACAAAGATTTCAT-AAATGTTTCTGGTGGACTTGTTGGTG 1190
Query 1007 GGTCGGATCCTCCCGCCTTCCAGCGAGCAGAGAAAGAGAGAATGGAGGAAAAAGCTTCTA 1066
|||| ||||||| || |||||||| |||||||||||| ||||||| |||| || |||
Sbjct 1191 GGTCCAATCCTCCTGCTTTCCAGCGCGCAGAGAAAGAGCGAATGGA--AAAA-GCAGCTA 1247
Query 1067 GAGAAGAAAACGA 1079
|||||||||||||
Sbjct 1248 GAGAAGAAAACGA 1260
> AT2G01280.1 | Symbols: MEE65 | Cyclin/Brf1-like TBP-binding protein
| chr2:145676-149394 FORWARD LENGTH=2257
Length=2257
Score = 472 bits (255), Expect = 5e-132
Identities = 541/671 (81%), Gaps = 51/671 (8%)
Strand=Plus/Plus
Query 424 AGCTACCTTCGTGTTAGCGTTTACGATTTAGGTTCTGTGTATTTGCAACTCTGTGACATG 483
||||||||||| |||||||||||||| |||||||| ||||| |||||||||||||| |||
Sbjct 370 AGCTACCTTCGAGTTAGCGTTTACGAGTTAGGTTCCGTGTACTTGCAACTCTGTGAAATG 429
Query 484 CTCTACATTACAG-AAAACCACAACTACGAGAAACTTGTTGATCCTTCAATTTTCATTCC 542
|| ||| || | ||||| | ||||| ||| | ||||||||||||||||| ||||||||
Sbjct 430 CTGTACCTT-GTGCAAAACAAGAACTATGAGGAGCTTGTTGATCCTTCAATCTTCATTCC 488
Query 543 TGGATTCACAAACATG-TTATTGAAAGGTGCACACCGTAAGAAAGTCGTGGGAACA-GTC 600
| |||||||||||| | ||||||||||||||||| || |||| | || | |||
Sbjct 489 TCGATTCACAAACA-GCTTATTGAAAGGTGCACA-CG--CTAAAG-C---AAAAGATGTC 540
Query 601 GTGGACACGGCTACAGACATTATAGCTAGTATGAAGAGAGATTGGATGCAGACCGGACGG 660
| ||||||||| | |||||||| |||||||||||||||||||||| ||||| || |||
Sbjct 541 GCAAACACGGCTAAAAACATTATATCTAGTATGAAGAGAGATTGGATACAGACAGGCCGG 600
Query 661 AAACCAAGTGGAATATGTGGAGCAGCACTCTATACA-G-CTGCACTTTCTCATGGTATCA 718
||||||||||||||||||||||||||| | | |||| | |||||||||||||||||||||
Sbjct 601 AAACCAAGTGGAATATGTGGAGCAGCAAT-T-TACATGGCTGCACTTTCTCATGGTATCA 658
Query 719 AGTGCTCTAAGACAGATATCGTGAAAA-TTGTGCATATATGCGAAGCAACTCTAACTAAA 777
|| ||||| | |||| || | |||| |||||||||| || |||||||| |||| |||
Sbjct 659 TGTACTCTAGGGCAGACATTGC-AAAAGTTGTGCATATGTGTGAAGCAACAATAACCAAA 717
Query 778 AGATTGATTGAGTTTGGAAATACCGAGGCTGCAAGTTTTACTGCTGATGAGCTC-AGTAA 836
||||||| ||| |||| ||||||||||||| |||||| |||| ||||||||| | | |
Sbjct 718 AGATTGAATGAATTTGCTAATACCGAGGCTGGAAGTTTAACTGTTGATGAGCTTGA-TGA 776
Query 837 AA-CTGAAAGAGAAA--GaaaaaaaGAAACGGAATTGCGTAGTAAAAGGAATCCAATTTC 893
|| | ||| |||| | | ||| ||||| || || ||| | |||| |||
Sbjct 777 AAGC-GAA-GAGATATTGCGTAAA-GAAACT---TT---TACCCCAAG-A--CCAAATTC 824
Query 894 TTACAAAGAAGGAGTAGTGCTCTGTATGCATCAAG-ATTGTAAA-C-CTGTTGATTATGG 950
| |||||| | ||||||| ||||| ||| ||| ||| |||| | || ||| ||||||
Sbjct 825 TGACAAAG--G-AGTAGTGAACTGTAAACAT-AAGGATT-TAAAACGCT-TTGGTTATGG 878
Query 951 ATTATGTAAGAGCTGTTACGATGAGTTCATGA-AAGTTTCTGGTGGACTTGAAGGTGGGT 1009
|||||||||||||||| |||| || ||||| | || ||||||||||| ||| |||||||
Sbjct 879 ATTATGTAAGAGCTGTCACGACGATTTCATTATAA-TTTCTGGTGGAGTTGTTGGTGGGT 937
Query 1010 CGGATCCTCCCGCCT-TCCAGCGAGCAGAGAAAGAGAGAATGGAGGAAAAAGCTTCTAGA 1068
|||||||||| || | || ||||||||||||||||||||||||| |||| || |||||
Sbjct 938 CGGATCCTCCTGCTTATC-AGCGAGCAGAGAAAGAGAGAATGGA--AAAA-GCAGCTAGA 993
Query 1069 GAAGAAAACGA 1079
|||||||||||
Sbjct 994 GAAGAAAACGA 1004
> AT1G30455.1 | Symbols: | transcription regulators;translation
initiation factors;zinc ion binding;transcription activators
| chr1:10769722-10770775 FORWARD LENGTH=765
Length=765
Score = 272 bits (147), Expect = 5e-72
Identities = 208/235 (89%), Gaps = 14/235 (6%)
Strand=Plus/Plus
Query 481 ATGCTCTACATTACAGAAAACCACAACTACGAGAAACTTGTTGATCCTTCAATTTTCATT 540
||||||||| |||||||||||| ||| || ||||| |||||||||||||||| |||||||
Sbjct 1 ATGCTCTACCTTACAGAAAACCGCAAGTATGAGAACCTTGTTGATCCTTCAACTTTCATT 60
Query 541 CCTGGATTCACAAACATGTTATTGAAAGGTGCACACCGTAAGAAAGTCGTGGGAACAGTC 600
||| ||||| |||||| |||||||||||||||||| | || ||| | | ||||
Sbjct 61 CCTCGATTCTCAAACAAGTTATTGAAAGGTGCACA-C--AA-TAAG-C------A-AGTC 108
Query 601 GTGGACACGGCTACAGACATTATAGCTAGTATGAAGAG-AGATTGGATGCAGACCGGACG 659
||||| ||||||||| |||||||||||||||||||||| | | |||||||||||||||||
Sbjct 109 GTGGAAACGGCTACACACATTATAGCTAGTATGAAGAGTA-ACTGGATGCAGACCGGACG 167
Query 660 GAAACCAAGTGGAATATGTGGAGCAGCACTCTATACAGCTGCACTTTCTCATGGT 714
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 168 GAAACCAAGTGGAATATGTGGAGCAGCACTCTATACAGCTGCACTTTCTCATGGT 222
Score = 158 bits (85), Expect = 2e-37
Identities = 93/97 (96%), Gaps = 0/97 (0%)
Strand=Plus/Plus
Query 1003 GGTGGGTCGGATCCTCCCGCCTTCCAGCGAGCAGAGAAAGAGAGAATGGAGGAAAAAGCT 1062
||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 220 GGTGGCTCGGATCCTCCCTCCTTCCAGCGAGCAGAGAAAGAGAGAATGGAGGAAAAAGCT 279
Query 1063 TCTAGAGAAGAAAACGACAAACAACTAAATTCGGATG 1099
|||| |||||||||||||||||||| |||||||||||
Sbjct 280 TCTACAGAAGAAAACGACAAACAACAAAATTCGGATG 316
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62098074165
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5