BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918628
Length=927
Score E
Sequences producing significant alignments: (Bits) Value
AT2G35320.1 | Symbols: ATEYA, EYA | EYES ABSENT homolog | chr2:... 1493 0.0
> AT2G35320.1 | Symbols: ATEYA, EYA | EYES ABSENT homolog | chr2:14866832-14868860
REVERSE LENGTH=1277
Length=1277
Score = 1493 bits (808), Expect = 0.0
Identities = 888/927 (96%), Gaps = 3/927 (0%)
Strand=Plus/Plus
Query 1 ATGAATGACAATACATCACAAAAGCTCGGAACTTTGGTTTCTGATGGTGGACCAGTGAAT 60
|||||| | |||||||| ||||||| ||||||||||||||||||| |||||||||||||
Sbjct 112 ATGAATAATGATACATCAAAAAAGCTGGGAACTTTGGTTTCTGATGATGGACCAGTGAAT 171
Query 61 GTATATGTATGGGACATGGACGAGACTCTTATCTTACTTAGATCTTTGTTAAATGGGACT 120
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 172 GTATATGTATGGGACATGGACGAGACTCTTATCTTACTTAGATCTCTGTTAAATGGAACT 231
Query 121 TATGCTGAGTCTTTTAATGGCTCCAAAGATGTTAAAAGAGGTGTAGAGATTGGGAGGATG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 232 TATGCTGAGTCTTTTAATGGCTCCAAAGATGTTAAAAGAGGTGTAGAGATTGGGAGGATG 291
Query 181 TGGGAGAAACACATACTTAAGATCTGTGACGATTTTTTCTTCTACGAGCAAATTGAGGAA 240
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 292 TGGGAGAAACACATACTTAAGATCTGTGACGATTTTTTCTTCTACGAGCAAGTTGAGGAA 351
Query 241 TGCAATGAGCCATTTCTTGATTCTTTGAGACAGTACGATGACAGAAAGGATCTTTCTCTC 300
||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||
Sbjct 352 TGCAATGAGCCATTTCTTGATTCATTGAGACAGTATGATGATGGAAAGGATCTTTCTCGG 411
Query 301 TATGACTTCAAACAAGACGACTTTAGTACTCCTACTGATGACTTGAACAAGAGGAAACTT 360
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 TATGAGTTCAAACAAGACGACTTTAGTACTCCTACTGATGACTTGAACAAGAGGAAACTT 471
Query 361 GCGTACAGGCATCGAGCTGTTGCACACAAATACGAAAAGGGTTTGTGTCCATTCCTTGAC 420
||||||||||||||||||||||| | | ||||||||||||||||||||||||| |||||
Sbjct 472 GCGTACAGGCATCGAGCTGTTGCGGAGAGATACGAAAAGGGTTTGTGTCCATTCATTGAC 531
Query 421 AGTGAATCGATGAATGTGTTGGATGAGTTGTATAATGTGACTGATGAATACACAGAACGG 480
|| |||||||||| || ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 532 AGCGAATCGATGAGTGGGTTGGATGAGTTGTATAATGTGACTGATGAATACACAGACCGG 591
Query 481 TGGCTTTCTTCGGCAAGGGCTTTCTTGGAGCAGTGTTCATGTGTGAAAGAAGAGTCCAGT 540
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 592 TGGCTTTCTTCGGCAAGGGCTTTCTTGGAGCAGTGTTCATGTGTG---GAAGAGTCTAGT 648
Query 541 GATGGACCAAGTGCAATCGATCAAAGCTCTCAGGATATACATATTCTAGTGACTTCCGGG 600
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 649 GATGGAACAAGTGCAATCGAACAAAGCTCTCAGGATATACATATTCTAGTGACTTCCGGG 708
Query 601 GCCCTCATACCGAGCCTCGTGAAGTGCCTGCTTTTCCGGCTAGATACATTCCTAAGACAT 660
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 709 GCCCTCATACCGAGCCTCGTGAAATGCCTGCTTTTCCGGCTAGATACATTCCTAAGACAT 768
Query 661 GAAAATGTGTACAGTTCAATAGATGTGGGGAAGCTCCAATGTTTCAAATGGATCAAAGAG 720
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 769 GAAAATGTGTACAGTTCAATAGATGTGGGGAAGCTCCAATGTTTCAAATGGATCAAGGAG 828
Query 721 CGTTTCAACCACCCAAAATTCAGATTCTGTGTGATCGGGGACGGATGGGAAGAGTGTGCA 780
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 829 CGTTTCAACCACCCAAAATTCAGATTCTGTGCGATCGGGGACGGATGGGAAGAGTGTGCA 888
Query 781 GCCGCACAGGCAATGCAATGGCCATTCGTTAAGATCGATTTGCAACCGGATAGCTCCCAC 840
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 GCCGCACAAGCCTTGCAATGGCCATTCGTTAAGATCGATTTGCAACCGGATAGCTCCCAC 948
Query 841 AGATTCCCTGGCGTAACACCTAAGACTGTGAGCTACTACTTTGCTGCTGTATATGGGAAC 900
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 949 AGATTCCCTGGCTTAACACCTAAGACTGTAAGCTACTACTTTGCTGCTGTATATGGGAAC 1008
Query 901 TCTGATGCTGATTCCAGCAAAGAGTAA 927
|||||||||||||||||||||||||||
Sbjct 1009 TCTGATGCTGATTCCAGCAAAGAGTAA 1035
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45311200594
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5