BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918637
Length=819
Score E
Sequences producing significant alignments: (Bits) Value
AT4G34440.1 | Symbols: | Protein kinase superfamily protein | ... 335 4e-91
> AT4G34440.1 | Symbols: | Protein kinase superfamily protein
| chr4:16465828-16468956 FORWARD LENGTH=2317
Length=2317
Score = 335 bits (181), Expect = 4e-91
Identities = 207/220 (94%), Gaps = 0/220 (0%)
Strand=Plus/Plus
Query 218 ATTTTGGATTAGCTAAGTTATCTCAAGACAACTATACTCATGTCTCTACTCGAGTCATGG 277
|||||||||| |||||| |||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1457 ATTTTGGATTGGCTAAGCTATCTCAAGACAACTATACTCATGTCTCCACTCGCGTCATGG 1516
Query 278 GAACTTTTGGATACTTAGCTCCAGAGTATGCTTCAAGTGGAAAGTTATCCGACAAATCTG 337
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1517 GAACTTTTGGATACTTAGCTCCAGAGTATGCATCAAGCGGAAAGTTATCCGACAAATCTG 1576
Query 338 ATGTTTTCTCATTTGGAGTAATGCTTCTTGAGCTCATAACCGGACGACCTCATGTGGATC 397
|||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||
Sbjct 1577 ATGTTTTCTCATTTGGAGTAATGCTTCTTGAGCTCATAACCGGAAGACCTCCTCTGGATC 1636
Query 398 TAACTGGAGAAATGGAAGACAGCTTGGTCGACTGGGTAAG 437
||||||||||||||||||| |||||||| || |||| |||
Sbjct 1637 TAACTGGAGAAATGGAAGATAGCTTGGTAGATTGGGCAAG 1676
Score = 329 bits (178), Expect = 2e-89
Identities = 248/280 (89%), Gaps = 11/280 (4%)
Strand=Plus/Plus
Query 547 ATTGTACGAGCACTAGAAGGAGATATGTCAATGGAGGATCTAAGTGAAGGAACAAGACCG 606
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1834 ATTGTACGAGCACTAGAAGGAGATATGTCAATGGATGATCTAAGTGAGGGAACAAGACCA 1893
Query 607 GGACAAAGCACCTATTTGAGCCCCGGAAGCGTGAGCTCGGAGTATGATGCAAGCTCTTAC 666
||||||||||| || ||||||||||| ||||||||||| |||||||| |||||||| |||
Sbjct 1894 GGACAAAGCACGTACTTGAGCCCCGGGAGCGTGAGCTCAGAGTATGACGCAAGCTCGTAC 1953
Query 667 A-GTGCAGACATGAAAAAATTCAAGAAATTGGCGTTAGAGAATAAAGAA-A--AAATTCA 722
| | |||||||||||||| ||||||||| |||||||||||||||||||| | ||| ||
Sbjct 1954 ACG-GCAGACATGAAAAAGTTCAAGAAACTGGCGTTAGAGAATAAAGAATATCAAAG-CA 2011
Query 723 A-GAA-ATTGGCGTTAGA-GATGAGTATGGCTTAAATCCTTCTGCTTCAAGTAGAGAAGA 779
||| || || | | | | ||||||||||||||| ||||||||||||||||| |||||
Sbjct 2012 GTGAATAT-GGTGGAACAAG-TGAGTATGGCTTAAACCCTTCTGCTTCAAGTAGTGAAGA 2069
Query 780 AATGAATAGAGGTTCAATGAAACGCAATCCTAAGCTTTGA 819
|||||||||||| |||||||||||||||||| ||||||||
Sbjct 2070 AATGAATAGAGGCTCAATGAAACGCAATCCTCAGCTTTGA 2109
Score = 159 bits (86), Expect = 3e-38
Identities = 124/140 (89%), Gaps = 12/140 (9%)
Strand=Plus/Plus
Query 3 GTCAAATTTGCTAGGACAAGGACGATTTGGGTATGTTCATAAAGGAGTTTTGCCTTGTGG 62
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||
Sbjct 1038 GTCAAATTTGCTAGGACAAGGAGGATTTGGGTATGTTCATAAAGGAGTTCTGCCTAGTGG 1097
Query 63 CAAAGAAGTTGCAGTGAAGAGTCTTAAAC----AAG-GT----G---AACGCGAGTTTCA 110
||||||||||||||||||||||||||||| ||| | | |||||||||||||
Sbjct 1098 CAAAGAAGTTGCAGTGAAGAGTCTTAAACTTGGAAGTGGACAAGGGGAACGCGAGTTTCA 1157
Query 111 AGCAGAGGTTGATATCATTA 130
||||||||||||||||||||
Sbjct 1158 AGCAGAGGTTGATATCATTA 1177
Score = 82.4 bits (44), Expect = 6e-15
Identities = 46/47 (98%), Gaps = 0/47 (0%)
Strand=Plus/Plus
Query 467 CTGCAGCAATCAGACACTCAGCAAGAAGACGGCCTAAGATGAGCCAG 513
|||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1787 CTGCAGCAATCAGACATTCAGCAAGAAGACGGCCTAAGATGAGCCAG 1833
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39885912718
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5