BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918648
Length=198
Score E
Sequences producing significant alignments: (Bits) Value
AT5G55800.1 | Symbols: | Cysteine/Histidine-rich C1 domain fam... 224 2e-58
AT4G10370.1 | Symbols: | Cysteine/Histidine-rich C1 domain fam... 204 3e-52
AT3G26550.1 | Symbols: | Cysteine/Histidine-rich C1 domain fam... 195 2e-49
> AT5G55800.1 | Symbols: | Cysteine/Histidine-rich C1 domain family
protein | chr5:22581694-22583430 FORWARD LENGTH=1737
Length=1737
Score = 224 bits (121), Expect = 2e-58
Identities = 165/186 (89%), Gaps = 4/186 (2%)
Strand=Plus/Plus
Query 4 GCTTATGACAAAAACAAGTATTGTCGAGGGTGTGCGCTTCCAG-TCTACGAAGGTCAGTT 62
||||||||| |||| | |||||||||||||||||||||||| | |||| |||||||| ||
Sbjct 1003 GCTTATGACGAAAATACGTATTGTCGAGGGTGTGCGCTTCC-GATCTATGAAGGTCAATT 1061
Query 63 CTATTCATGCATGGAATGCAAGTTCATACTCCATGAAAGTTGTGCCAATGCTCCACGCAT 122
||||||||||||||||||| | || || ||||||||||||||||| ||||||||| ||||
Sbjct 1062 CTATTCATGCATGGAATGCGACTTTATCCTCCATGAAAGTTGTGCAAATGCTCCATGCAT 1121
Query 123 GAAACGACATCCCTTACATCCATATCCACTTACACTTG-ACAATATGGCATCTGCTGGTA 181
||| ||||||||||||||||||||||||||||||||| | || | ||||||| |||||
Sbjct 1122 GAAGCGACATCCCTTACATCCATATCCACTTACACTTTTA-AACACGGCATCTCCTGGTG 1180
Query 182 AGGAAA 187
||||||
Sbjct 1181 AGGAAA 1186
> AT4G10370.1 | Symbols: | Cysteine/Histidine-rich C1 domain family
protein | chr4:6423577-6425661 REVERSE LENGTH=2085
Length=2085
Score = 204 bits (110), Expect = 3e-52
Identities = 141/156 (90%), Gaps = 2/156 (1%)
Strand=Plus/Plus
Query 4 GCTTATGACAAAAACAAGTATTGTCGAGGGTGTGCGCTTCCAGTCTACGAAGGTCAGTTC 63
||||||||| |||| | |||||||||||||||||| |||||| |||||||||||||||||
Sbjct 1147 GCTTATGACGAAAATACGTATTGTCGAGGGTGTGCCCTTCCAATCTACGAAGGTCAGTTC 1206
Query 64 TATTCATGCATGGAATGCAAGTTCATACTCCATGAA-AGTTGTGCCAATGCTCCACGCAT 122
||||||||||| ||| || | ||||| ||||||||| | |||||| ||||||||||||||
Sbjct 1207 TATTCATGCATTGAAAGCGACTTCATCCTCCATGAACA-TTGTGCAAATGCTCCACGCAT 1265
Query 123 GAAACGACATCCCTTACATCCATATCCACTTACACT 158
||| |||||||||||||||||| |||||||||||||
Sbjct 1266 GAAGCGACATCCCTTACATCCACATCCACTTACACT 1301
> AT3G26550.1 | Symbols: | Cysteine/Histidine-rich C1 domain family
protein | chr3:9746895-9749046 REVERSE LENGTH=2152
Length=2152
Score = 195 bits (105), Expect = 2e-49
Identities = 136/151 (90%), Gaps = 2/151 (1%)
Strand=Plus/Plus
Query 6 TTATGACAAAAACAAGTATTGTCGAGGGTGTGCGCTT-CCAGTCTACGAAGGTCAGTTCT 64
|||||| |||| |||||||||||||||||| | || ||| |||||||||| |||||||
Sbjct 1113 TTATGATGAAAATAAGTATTGTCGAGGGTGTTC-TTTCCCAATCTACGAAGGCCAGTTCT 1171
Query 65 ATTCATGCATGGAATGCAAGTTCATACTCCATGAAAGTTGTGCCAATGCTCCACGCATGA 124
|||||||||||||||| | ||||| ||||||||||||||||| ||||||||||||||||
Sbjct 1172 ATTCATGCATGGAATGTGACTTCATCCTCCATGAAAGTTGTGCAAATGCTCCACGCATGA 1231
Query 125 AACGACATCCCTTACATCCATATCCACTTAC 155
|||||||||||||||||||| ||||||||||
Sbjct 1232 AACGACATCCCTTACATCCACATCCACTTAC 1262
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 8802736425
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5