BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918662
Length=1095
Score E
Sequences producing significant alignments: (Bits) Value
AT5G60090.1 | Symbols: | Protein kinase superfamily protein | ... 1203 0.0
AT5G60080.1 | Symbols: | Protein kinase superfamily protein | ... 283 2e-75
> AT5G60090.1 | Symbols: | Protein kinase superfamily protein
| chr5:24196082-24197725 REVERSE LENGTH=1197
Length=1197
Score = 1203 bits (651), Expect = 0.0
Identities = 840/930 (90%), Gaps = 18/930 (2%)
Strand=Plus/Plus
Query 1 ATGAAACGTTTCTTTTGCTGTCTCAAAGGAGGAAGCTCACGTAACGCAGGGCAAGGTAAC 60
|||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 1 ATGAAACGTTTCTTATGCTGTCTCAAAGGAGGAAGCTCAAGTAACGCAGCGCAAGGTAAC 60
Query 61 GACGAGAACGACGAAGTAAACCTCGACCGACC-ATTTGGGAATAACGAGCGCCTCAATCA 119
|||||||||||||||||| | |||| || || |||||||||||||||||||||||||||
Sbjct 61 GACGAGAACGACGAAGTAGATGTCGAGCG-CCTATTTGGGAATAACGAGCGCCTCAATCA 119
Query 120 TCTTTGGAGAAATCATCTCTC-ACTTCCTGACGATCGTGAAGTTGCAGATCCCACTGCTC 178
||||||||||||||||||| | ||| |||||||||||||||||||||||||| ||||||
Sbjct 120 TCTTTGGAGAAATCATCTC-CGACTCCCTGACGATCGTGAAGTTGCAGATCCGACTGCT- 177
Query 179 G-TTTTTTCCCTA-TATCTCCACCTCTACCTGATAATTGTGGAGCATCATTTCTATGGCG 236
| | | || || | |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 178 GCTCTGTTACC-AGTATCTCCACCTCTACCTGATAATTGTGGAGAATCATTTCTATGGCG 236
Query 237 CGAACTCGTAGACGGAACAATAAACTTCCGGGACGAATATTT-TCTCGGCAGAGGCAACT 295
|| |||||| ||||||| ||||||||||||||||||| ||| |||||||| ||||||||
Sbjct 237 TGAGCTCGTAAACGGAACCATAAACTTCCGGGACGAAT-TTTATCTCGGCAAAGGCAACT 295
Query 296 TCGGCGAAGTCTATCGCTGCCGCTTCTCAAGACTTAATGAGGATGGAGCCGTAAAGATTC 355
||||||||||| |||||||| |||||||||||||||| ||||||||| |||||| |||
Sbjct 296 TCGGCGAAGTCCATCGCTGCTATTTCTCAAGACTTAATGTGGATGGAGCGGTAAAGGTTC 355
Query 356 AAAAACCAGACAATCCAACTGGTCATGTTGAGTTCTTGGCAGAGGTTACAACGTTACATG 415
|||| ||| | |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 356 AAAATCCACAGAATCCAACTGGTCATGTTGAGTTCTTGGCAGAGGTTACAACGTTACGTG 415
Query 416 CAGCTAATCACCCAAATGTGATTAGACTTCTTGGCCATTGTTACGGCCAAAGGAACCGTG 475
|| ||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 416 CAACTAATCATCCAAATGTGATTAGACTTCTTGGCAACTGTTACGGCCAAAGGAACCGTG 475
Query 476 CTATAGTCTACGAATTCATGCCCAATGGCTG-TCTTGAGCGTCACATCTTTGCACACGCA 534
||||| | |||||||||||| |||| || | ||||||||||||||||||||||||| |
Sbjct 476 CTATAATTTACGAATTCATGGCCAACGGA-GATCTTGAGCGTCACATCTTTGCACACAAA 534
Query 535 ACGAGGGTGCAGGGTCCGTTTCCTCAGGGTCTA-CAACTACCAATTAGGGTTTTGGATTG 593
|||| |||| |||||||| ||| |||||||| || |||||||||||||||||||||||
Sbjct 535 ACGATGGTGGAGGGTCCGCGACCTAAGGGTCTAACA-CTACCAATTAGGGTTTTGGATTG 593
Query 594 GGATACGAGGATGAGAATTGCTTTGGGTGTAGCCAAGGGTCTGGTTTATCTACACCAGGA 653
| | |||||||||| ||||||| |||||||||||||||| ||||||||||||||| ||||
Sbjct 594 GTACACGAGGATGAAAATTGCTGTGGGTGTAGCCAAGGGCCTGGTTTATCTACACGAGGA 653
Query 654 GCTGAAAGTGATTAACCGAGATGTCAAGGCCGGAAATAT-TCTACTTGATGCAAATTTTG 712
|||||||||||||||| ||||||||||||||||||| || | ||||||||||| ||||||
Sbjct 654 GCTGAAAGTGATTAACAGAGATGTCAAGGCCGGAAACATAT-TACTTGATGCAGATTTTG 712
Query 713 TGCCGAAGCTGACTGATTTTGGATTGGCGACTAAAATCGATGTAGATGAAAACGGTGTTG 772
| ||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 713 TTCCGAAGCTGACAGATTTTGGATTGGCGACTAAAATCGTTGAAGATGAAAACGGTGTTG 772
Query 773 AGAAGCAG-ATCCTGATCAATCCGATGAAGGGATCTTTGGGATACATTGCACCGGAAGGA 831
|| ||||| | | ||||| ||||||||||| |||| |||||||||||||||||||||||
Sbjct 773 AGCAGCAGCAACG-GATCATTCCGATGAAGGCATCTATGGGATACATTGCACCGGAAGGA 831
Query 832 GAGATTTCCGGGTTTGTTTCGACTAAGACTGATGTCTATAGCTATGGAGCTCTTCTGGTA 891
||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 832 GAGATTTCCTGGTTGGTTTCGACTAAGACTGATGTCTATAGCTATGGAGCTTTTCTGTTA 891
Query 892 GTGCTTTTCACCGGAAGGGAGCCTTTCTAT 921
|||||||||||||||||| | ||||| |||
Sbjct 892 GTGCTTTTCACCGGAAGGAAACCTTTTTAT 921
> AT5G60080.1 | Symbols: | Protein kinase superfamily protein
| chr5:24193181-24194909 REVERSE LENGTH=1134
Length=1134
Score = 283 bits (153), Expect = 2e-75
Identities = 415/535 (78%), Gaps = 43/535 (8%)
Strand=Plus/Plus
Query 394 GCAGAGGTTACAACGTTACATGCAGCTAATCACCCAAATGTGATTAGACTTCTTGGCCAT 453
|||||| |||||||||| |||||||| |||||||||||||||||| |||| | ||| |
Sbjct 349 GCAGAGACTACAACGTTATATGCAGCTGATCACCCAAATGTGATTAAACTTGTCGGCAAA 408
Query 454 TGTTACGGCCAAAGG--AACCGTGCT-ATAGTCTACGAATTCATGCCCAATGGCTGTCTT 510
| ||| || | || || ||| | ||||||||||||||||||| ||||||| ||||
Sbjct 409 TATTATGG--GATGGAAAAAAGTG-TCCTAGTCTACGAATTCATGCCTAATGGCTCTCTT 465
Query 511 GAGCGTCA-CATCTTTGCACACGCAACGAGGGTGCAGGGTCCGTTTCCTCAGGGTC-TAC 568
|| | || | ||||||| |||| ||| | ||| | | | |||||||| |||
Sbjct 466 GACCACCATC-TCTTTGCTCACG---CGA--G-GCA--G---G--T--TCAGGGTCTTAC 509
Query 569 AACTACCAATTAGGGTTTTGGATTGGGATACGAGGATGAGAATTGCT-TTGGGTGTAGCC 627
|| |||| |||||||||||||||| | |||||| ||||||||||| || |||||||||
Sbjct 510 -TCTGCCAACTAGGGTTTTGGATTGGAACACGAGGTTGAGAATTGCTGTT-GGTGTAGCC 567
Query 628 -AAGGGTCTGGTTTATCTACACCAGGAGCTGAAAGTGATTAACCGAGATGTCAAGGCCGG 686
|| ||||| |||||| ||||||||| ||| | | |||| || ||||| |||| | ||
Sbjct 568 GAA-GGTCTTGTTTATGTACACCAGGGGCTTTATGCGATTCACAGAGATATCAAAGTCGA 626
Query 687 AAATATTCTACTTGATGCAA--ATTTTGTGCCGAAGCTGACTGATTTTGGATTGGCGACT 744
||| ||| ||||||| ||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 627 AAACATTTTACTTGA--CAAGGATTTTGTGCCGAAGCTGACTGATTTTGGATTTGCGACT 684
Query 745 AAAATCGATGTAGA-T-GAAAACGGTGTTGAGAAGCAGATCCTGATCAATCCGATGAAGG 802
|| |||| | || | | | | |||||||||| || || | ||||| || | ||
Sbjct 685 AAGATCGTT-TACAATAGTGAT-GGTGTTGAGAGGCTGAGGGAGTTCAATACGC-GT-GG 740
Query 803 GATCTTTGGGATACATTGCACCGGAAGGAGA-GATTTCCGGGTTTGTTTCGACTAAGACT 861
| || |||||||| |||||||||| ||| || ||| | ||| |||||||||||| |
Sbjct 741 AA-CTCAAGGATACATAGCACCGGAAGCAGATGAGTTC-GCGTTGGTTTCGACTAAGTCC 798
Query 862 GATGTCTATAGCTATGGAGCTCTTCTGGTAGTGCTTTTCACCGGAAGGGA-GCCT 915
||| ||||||||||||||| ||||||| |||||||||| || |||||| | ||||
Sbjct 799 GATATCTATAGCTATGGAGTTCTTCTGTTAGTGCTTTTAACTGGAAGGAAAGCCT 853
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53664382605
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5