BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918666
Length=1071
Score E
Sequences producing significant alignments: (Bits) Value
AT2G35690.1 | Symbols: ACX5 | acyl-CoA oxidase 5 | chr2:1499975... 1712 0.0
AT4G16760.1 | Symbols: ACX1, ATACX1 | acyl-CoA oxidase 1 | chr4... 998 0.0
> AT2G35690.1 | Symbols: ACX5 | acyl-CoA oxidase 5 | chr2:14999754-15003066
FORWARD LENGTH=2377
Length=2377
Score = 1712 bits (927), Expect = 0.0
Identities = 1024/1072 (96%), Gaps = 2/1072 (0%)
Strand=Plus/Plus
Query 1 ATGGAGAGAGTTGATCACCTTGCTGATGAGAGGAACAAAGCTGAGTTCAACGTCGACGAT 60
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 209 ATGGAGAGAGTTGATCACCTTGCCGATGAGAGGAACAAAGCAGAGTTCAACGTCGACGAT 268
Query 61 ATGAAGATCGTCTGGGCCGGTTCCCGCCACGCTTTCGACGTTTCAAATCGCATTTCTCGC 120
|||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||
Sbjct 269 ATGAAGATCGTCTGGGCCGGTTCCCGCCACGCTTTCGATGTTTCAAATCGTATGTCTCGC 328
Query 121 CTCGTCGCCAATGATCCGATCTTTGAGAAAAGCAAAAGAGCAGTAATGAGAAGGAAAGAG 180
|||||||| ||||||||| |||||||||||||||||||||| || ||||| |||||||||
Sbjct 329 CTCGTCGCTAATGATCCGGTCTTTGAGAAAAGCAAAAGAGCTGTGATGAGTAGGAAAGAG 388
Query 181 TTATTCAAGAACACGTTGAGAAAAAGTGTTCACGCTTGGAAGATGATTAACGAGCTTCGT 240
|| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 389 TTGTTCAAGAACACGTTGAGGAAAAGTGTTCACGCTTGGAAGTTGATTAACGAGCTTCGT 448
Query 241 CTCTCTGATGAGGAAGGAATCAAATTAAGATCTTTCATGGATCAACCAGGCTTCTTGGAT 300
||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 449 CTCTCAGATGAGGAAGGACTCAAATTGAGATCTTTCATGGATCAACCAGGCTTCTTGGAT 508
Query 301 CTGCATTGGGGAATGTTTGTGCCTGCACTTAAAGGACAAGGCACAGAAG-AACAGCAACA 359
||||||||||||||||||||||||||| |||||||||||||||||| || |||| |||||
Sbjct 509 CTGCATTGGGGAATGTTTGTGCCTGCAATTAAAGGACAAGGCACAG-AGCAACAACAACA 567
Query 360 CAAGTGGTTGTCTCTAGCTAATAAGATGCAGATAATTGGATGTTATGCTCAAACTGAGCT 419
|||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 568 AAAGTGGTTGTCTTTAGCTACTAAGATGCAGATAATTGGATGTTATGCTCAAACTGAGCT 627
Query 420 TGGTCATGGCTCTAATGTTCAAGGACTTGAGACAACCGCCACTTTCGATCCAAAGACAGA 479
|||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||
Sbjct 628 TGGTCATGGCTCTAATGTTCAAGGCCTTGAGACAACCGCTACTTTTGATCCAAAGACAGA 687
Query 480 CCAGTTTATCATTCACAGTCCAACTCAGACATCATCTAAATGGTGGCCTGGTGGACTAGG 539
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 688 TCAGTTTATCATTCACAGTCCAACTCAGACATCATCCAAATGGTGGCCTGGTGGGTTAGG 747
Query 540 AAAAGTTTCTACTCATGCTGTTGTTTATGCTCGTCTAATAACCAATGGCAAAGACCATGG 599
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 748 AAAAGTTTCTACTCATGCTGTTATTTATGCTCGTCTAATAACCAATGGCAAAGACCATGG 807
Query 600 TGTCCATGGATTCATCGTGCAGCTGCGTAGTTTGGATGATCATTCTCCGCTTCCAGGTAT 659
||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 808 TGTACATGGATTCATCGTGCAGCTGCGTAGTTTGGATGATCATTCTCCTCTTCCGGGTAT 867
Query 660 AACCGTTGGTGATATCGGAATGAAGTTTGGAAACGGGGCATATAACTCAATGGACAATGG 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 868 AACCGTTGGTGATATCGGAATGAAGTTTGGAAACGGGGCATATAACTCAATGGACAATGG 927
Query 720 TTTTCTTATGTTTGATCATTTTCGTATTCCTAGAGATCAAATGCTCATGAGACTGTCAAA 779
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 928 TTTTCTTATGTTTGATCATTTTCGCATTCCTAGAGATCAAATGCTCATGAGACTGTCAAA 987
Query 780 AGTTACAAGAGAAGGAAAATATGTAGCATCAGATGTTCCAAGGCAATTGGTGTATGGTAC 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 988 AGTTACAAGAGAAGGAAAATATGTAGCATCAGATGTTCCAAGGCAATTGGTGTATGGTAC 1047
Query 840 TATGGTGTATGTGAGACAGTCTATTGTGTCAAATGCTTCCACCGCGCTGGCTCGGGCGGT 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1048 TATGGTGTATGTGAGACAGTCTATTGTGTCAAATGCTTCCACCGCGCTGGCTCGGGCAGT 1107
Query 900 CTGCATTGCTACAAGGTACAGTGCTGTTCGAAGGCAGTTTGGCTCACAGGATGGTGGAAT 959
||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1108 TTGCATTGCTACTAGGTACAGTGCTGTTCGAAGGCAGTTTGGCTCACATGATGGTGGCAT 1167
Query 960 TGAGACACAGGTGATTGATTATAAAACACAGCAGAACAGATTGTTTCCTCTGCTAGCATC 1019
|||||||||||||||| |||||||||| ||||||||||| |||||||||||||| |||||
Sbjct 1168 TGAGACACAGGTGATTAATTATAAAACTCAGCAGAACAGGTTGTTTCCTCTGCTGGCATC 1227
Query 1020 TGCATATGCATTTCGATTTGTAGGGGAGTGGCTGAAATGGCTCTACACCGAT 1071
||||||||||||||| ||||||||||| |||||||| ||||||||||| |||
Sbjct 1228 TGCATATGCATTTCGGTTTGTAGGGGAATGGCTGAAGTGGCTCTACACTGAT 1279
> AT4G16760.1 | Symbols: ACX1, ATACX1 | acyl-CoA oxidase 1 | chr4:9424633-9428864
REVERSE LENGTH=2467
Length=2467
Score = 998 bits (540), Expect = 0.0
Identities = 907/1084 (84%), Gaps = 26/1084 (2%)
Strand=Plus/Plus
Query 1 ATGG-AGAGAGTTGATCACCTTGCTGATGAGAGGAACAAAGCTGAGTTCAACGTCGACGA 59
|||| || || |||||||||| || |||||||| |||||||| |||||| |||| || ||
Sbjct 176 ATGGAAG-GAATTGATCACCTCGCCGATGAGAGAAACAAAGCAGAGTTCGACGTTGAGGA 234
Query 60 TATGAAGATCGTCTGGGCCGGTTCCCGCCACGCTTTCGACGTTTCAAATCGCATTTCTCG 119
|||||||||||||||||| ||||||||||||||||| || ||||| |||| ||| | ||
Sbjct 235 TATGAAGATCGTCTGGGCTGGTTCCCGCCACGCTTTTGAGGTTTCCGATCGAATTGCCCG 294
Query 120 CCTCGTCGCCAATGATCCGATCTTTGAGAAAAGCAAAAGAG--CAGTAATGAGAAGGAAA 177
||| ||||||| |||||| | |||||||||||||| ||| | || |||| |||||
Sbjct 295 CCTTGTCGCCAGCGATCCGGTATTTGAGAAAAGCAATCGAGCTCGGT--TGAGTAGGAAG 352
Query 178 GAGTTATTCAAGAACACGTTGAGAAAAAGTGTTCACGC-TTGGAAGATGATTAACGAGCT 236
||| | || |||| |||||||||||| ||| || || || || | ||||| ||||||
Sbjct 353 GAGCTGTTTAAGAGTACGTTGAGAAAATGTGCCCATGCGTT-TAAAAGGATTATCGAGCT 411
Query 237 TCGTCTCTCTGATGAGGAAGGAATCAA-ATT-AAG-ATCTTTCATGGATCAACCAGGCTT 293
||||||| ||| || ||| | | || ||| | | | |||| || || || || || |
Sbjct 412 TCGTCTCAATGAGGAAGAA-GCAGGAAGATTGAGGCA-CTTT-ATCGACCAGCC-TGCCT 467
Query 294 CT-TGGATCTGCATTGGGGAATGTTTGTGCCTGC-ACTTAAAGGACAAGGCACAGAAGAA 351
| |||||||||| |||||||||||||||||||| | |||| || || || ||||| ||
Sbjct 468 ATGTGGATCTGCACTGGGGAATGTTTGTGCCTGCTA-TTAAGGGGCAGGGTACAGAGGAG 526
Query 352 CAGCA-ACACAAGTGGTTGTCTCTAGCTAATAAGATGCAGATAATTGGATGTTATGCTCA 410
||||| | | ||||||||||| || || |||||||||||||| ||||| |||||||| ||
Sbjct 527 CAGCAGA-AGAAGTGGTTGTCGCTGGCCAATAAGATGCAGATTATTGGGTGTTATGCACA 585
Query 411 AACTGAGCTTGGTCATGGCTCTAATGTTCAAGGACTTGAGACAACCGCCAC-TTTCGATC 469
|||||||||||||||||||| ||||||||||||||||||||||| ||||| ||| ||||
Sbjct 586 GACTGAGCTTGGTCATGGCTCAAATGTTCAAGGACTTGAGACAACTGCCACATTT-GATC 644
Query 470 CAAAGACAGACCAGTTTATCATTCACAGTCCAACTCAGACAT-CATCTAAATGGTGGCCT 528
| ||||| || ||||| | ||||||| |||||||||||| | |||| ||||||||||||
Sbjct 645 CCAAGACTGATGAGTTTGTAATTCACACTCCAACTCAGAC-TGCATCCAAATGGTGGCCT 703
Query 529 GGTGGACTAGGAAAAGTTTCTACTCATGCTGTTGTTTATGCTCGTCTAATAACCAATGGC 588
||||| | ||||||||||||||||||||||||||||| |||||||| ||||| || ||
Sbjct 704 GGTGGTTTGGGAAAAGTTTCTACTCATGCTGTTGTTTACGCTCGTCTCATAACTAACGGA 763
Query 589 AAAGACCATGGTGTCCATGGATTCATCGTGCAGCTGCGTAGTTTGGATGATCATTCTCCG 648
|||||| | ||| ||||||||||||||||||| ||||| || || || |||||||||||
Sbjct 764 AAAGACTACGGTATCCATGGATTCATCGTGCAACTGCGAAGCTTAGAAGATCATTCTCCT 823
Query 649 CTTCCAG-GTATAACCGTTGGTGATATCGGAATGAAGTTTGGAAACGGGGCATATAACTC 707
||||| | |||||| |||||||||||||| | ||| | ||||| || |||||||| ||
Sbjct 824 CTTCC-GAATATAACTGTTGGTGATATCGGGACAAAGATGGGAAATGGAGCATATAATTC 882
Query 708 AATGGACAATGGTTTTCTTATGTTTGATCATTTTCGTATTCCTAGAGATCAAATGCTCAT 767
||||||||| || |||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 883 AATGGACAACGGGTTTCTTATGTTTGATCATGTTCGCATTCCTAGAGATCAAATGCTCAT 942
Query 768 GAGACTGTCAAAAGTTACAAGAGAAGGAAAATATGTAGCATCAGATGTTCCAAGGCAATT 827
||| |||||||||||||||||||||||| ||||||| |||| |||||||||| ||| |
Sbjct 943 GAGGCTGTCAAAAGTTACAAGAGAAGGAGAATATGTTCCATCGGATGTTCCAAAGCAGCT 1002
Query 828 GGTGTATGGTACTATGGTGTATGTGAGACAGTCTATTGTGTCAAATGCTTCCACCGCGCT 887
||| |||||||||||||||||||||||||| | |||||| | ||||||||| || ||
Sbjct 1003 GGTATATGGTACTATGGTGTATGTGAGACAAACAATTGTGGCTGATGCTTCCAATGCACT 1062
Query 888 GGCTCGGGCGGTCTGCATTGCTACAAGGTACAGTGCTGTTCGAAGGCAGTTTGGCTCACA 947
|||| || || ||||| |||||||| |||||||| || || ||||| |||||| ||||
Sbjct 1063 ATCTCGAGCAGTTTGCATAGCTACAAGATACAGTGCAGTGCGGAGGCAATTTGGCGCACA 1122
Query 948 GGATGGTGGAATTGAGACACAGGTGATTGATTATAAAACACAGCAGAACAGATTGTTTCC 1007
||||||| ||||||||||||||||||||||||||||| ||||||||||| | |||||
Sbjct 1123 TAATGGTGGCATTGAGACACAGGTGATTGATTATAAAACTCAGCAGAACAGGCTATTTCC 1182
Query 1008 TCTGCTAGCATCTGCATATGCATTTCGATTTGTAGGGGAGTGGCTGAAATGGCTCTACAC 1067
||||||||||||||||||||||||||||||||| || |||||||| |||||||| |||||
Sbjct 1183 TCTGCTAGCATCTGCATATGCATTTCGATTTGTTGGAGAGTGGCTAAAATGGCTGTACAC 1242
Query 1068 CGAT 1071
|||
Sbjct 1243 GGAT 1246
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52459569525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5