BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg918667

Length=387
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G35680.1 | Symbols:  | Phosphotyrosine protein phosphatases ...   558    1e-158


> AT2G35680.1 | Symbols:  | Phosphotyrosine protein phosphatases 
superfamily protein | chr2:14996713-14999085 REVERSE LENGTH=1800
Length=1800

 Score =  558 bits (302),  Expect = 1e-158
 Identities = 347/368 (94%), Gaps = 6/368 (2%)
 Strand=Plus/Plus

Query  1    ATGTATATCGAAGAACTGACAGAAAGGGAAGAGGAGGAGAAGGGGGAGAGATCGGTTGAG  60
            ||||||||| |||||||||| ||||  |  || ||||||||| |||||||||||||||||
Sbjct  496  ATGTATATCAAAGAACTGACGGAAA-CG--GATGAGGAGAAGAGGGAGAGATCGGTTGAG  552

Query  61   GATCACGTTGCTGATGGAGATAAGGCGATTTTGGTTAGCAGAGGAAACGTGATTGTGTTG  120
            ||| |||||| |||||||||||||||| | ||||| ||||||||||||||||||||||||
Sbjct  553  GATAACGTTGATGATGGAGATAAGGCGGTATTGGTGAGCAGAGGAAACGTGATTGTGTTG  612

Query  121  ACTACAAAGAGGGCACTCGTTGGTGTTGGTGCTCGTGCCTTGTTTTATCCTACTCTGATT  180
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct  613  ACTACAAAGAGGGCACTCGTTGGTGTTGGTGCTCGTGCTTTGTTTTATCCTACTCTGGTT  672

Query  181  TACAACGTTGTTAGGAATAAGCTCGAGA-CTGAGTTTCGCTGGTGGGATCGAGTTGCTGA  239
            |||||||||||||||||||||||||| | |||||||||||||||||||||| || |||||
Sbjct  673  TACAACGTTGTTAGGAATAAGCTCGA-ATCTGAGTTTCGCTGGTGGGATCGCGTGGCTGA  731

Query  240  GTTTATATTACTGGGAGCTGTTCCATTCCCATCTGATGTTCCACAGCTGAAAGAGCTCGG  299
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  732  GTTTATATTACTGGGAGCTGTTCCATTTCCATCTGATGTTCCACAGCTGAAAGAGCTCGG  791

Query  300  TGTTTGTGGAGTGATCACTCTGAATGAGCCATATGAAACTTTGGTTCCATCGTCTCTCTA  359
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  792  TGTTTGTGGAGTGATCACTCTGAATGAGCCATATGAAACTTTGGTTCCATCGTCTCTCTA  851

Query  360  CAAAGTCT  367
            |||| |||
Sbjct  852  CAAA-TCT  858



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18247192887


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5