BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg918673

Length=711
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G53700.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) fami...  99.0    5e-20
  AT5G03495.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) fami...  89.8    3e-17


> AT5G53700.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family 
protein | chr5:21801143-21802787 FORWARD LENGTH=1075
Length=1075

 Score = 99.0 bits (53),  Expect = 5e-20
 Identities = 55/56 (98%), Gaps = 0/56 (0%)
 Strand=Plus/Plus

Query  473  AGATTGATCTCCAGATCGGGCTGAGTAAACATTTCTCTTCATGTGGAGAGGTCACC  528
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  488  AGATTGATCTCCAGATCGGGCTGTGTAAACATTTCTCTTCATGTGGAGAGGTCACC  543


> AT5G03495.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family 
protein | chr5:873331-875251 REVERSE LENGTH=1290
Length=1290

 Score = 89.8 bits (48),  Expect = 3e-17
 Identities = 79/93 (85%), Gaps = 6/93 (6%)
 Strand=Plus/Plus

Query  445  GTTACGGGTTATGACACTTCG-CTCCCTGAGATTGATCTCCAGATCGGGC-TGAGTAAAC  502
            |||||||| |||||||||| |  | ||| |||||||| ||||||| || | || || |||
Sbjct  620  GTTACGGGATATGACACTT-GTGTTCCTAAGATTGATATCCAGAT-GGCCTTGTGTGAAC  677

Query  503  ATTTCTCTTCATGTGGAGAGGTCAC-CAATGTT  534
            ||||||||||||||||||||||||| ||| |||
Sbjct  678  ATTTCTCTTCATGTGGAGAGGTCACGCAA-GTT  709



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 34460624842


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5