BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg918675

Length=429
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G26470.1 | Symbols:  | Calcium-binding EF-hand family protei...   719    0.0  


> AT4G26470.1 | Symbols:  | Calcium-binding EF-hand family protein 
| chr4:13371066-13372392 FORWARD LENGTH=892
Length=892

 Score =  719 bits (389),  Expect = 0.0
 Identities = 416/429 (97%), Gaps = 1/429 (0%)
 Strand=Plus/Plus

Query  1    ATGGGAGGTGCAGTGACGAAATCTGAAACTCTGCAAAAAGAATGGGTTCCAGAGACAAAG  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  148  ATGGGAGGTGCAGTGACGAAATCTGAAACTCTGCAAAAAGAATGGGTTCCAGAGACAAAG  207

Query  61   TTGGAGGCTAAGATCATAGAAGCCGTGCAACGCAGGGCATCGAGAGGCACCACAATGAAA  120
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  208  TTGGAGGCTAAGATCATAGAAGCCGTGCAACGCAGGGCATCGAGGGGCACCACAATGAAA  267

Query  121  TCTTTCAACAGCATTGTTCTCAAGTTCCCAAAGATCGATGATGGTCTTCGAAACTGCAAA  180
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  268  TCTTTCAACAGTATTGTTCTCAAGTTCCCAAAGATCGATGATGGTCTTCGAAACTGCAAA  327

Query  181  GCCATTTTCCAAGAATTTGATGAGGATTCAAACGGGTCTATCGATCACACAGAGCTAAAG  240
            ||||||||||||||||| |||||||||||||||||||| || |||||||| |||||||||
Sbjct  328  GCCATTTTCCAAGAATTCGATGAGGATTCAAACGGGTCAATAGATCACACGGAGCTAAAG  387

Query  241  AATTGTATCAAGAAGCTAGAGATCTCGTTCGATGAAGAAGAGATAAATGATTTGTTCAAG  300
            |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  388  AATTGTATCAGGAAGCTAGAGATCTCGTTCGATGAAGAAGAGATTAATGATTTGTTCAAG  447

Query  301  GCTTGTGATATTAACGAGGATATGGGAATTACATTTACAGAGTTCATTGTTCTTCTGTGC  360
            ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct  448  GCTTGCGATATTAACGAGGATATGGGAATTACATTTACAGAATTCATTGTTCTTCTTTGC  507

Query  361  CTCGTCTATCTTCTTAAAGACGATTCATCCACTCTCCAAAAGAAATGGACAATGGGA-TG  419
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  508  CTCGTCTATCTTCTTAAAGACGATTCATCCACTCTCCAAAAGAAATGGACAATGGGAATG  567

Query  420  CCGAAGCTG  428
            || ||||||
Sbjct  568  CCAAAGCTG  576



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20358438345


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5