BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918699
Length=552
Score E
Sequences producing significant alignments: (Bits) Value
AT1G77690.1 | Symbols: LAX3 | like AUX1 3 | chr1:29200941-29203... 931 0.0
AT2G38120.1 | Symbols: AUX1, WAV5, PIR1, MAP1 | Transmembrane a... 263 1e-69
> AT1G77690.1 | Symbols: LAX3 | like AUX1 3 | chr1:29200941-29203340
REVERSE LENGTH=1727
Length=1727
Score = 931 bits (504), Expect = 0.0
Identities = 536/552 (97%), Gaps = 0/552 (0%)
Strand=Plus/Plus
Query 1 GCGTTTGGCGATAAGCTACTAACTCATTCCAATGCGCGCTCTCTTCTCCCTAAGTCCGGT 60
||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||
Sbjct 885 GCGTTTGGCGATAAGCTACTAACTCATTCCAATGCGCTCTCTCTTCTCCCTAAGACTGGT 944
Query 61 TTTAGAGATACCGCAGTGATCCTCATGCTCATTCATCAGTTTATAACATTCGGATTCGCA 120
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 945 TTTAGAGATACCGCAGTGATCCTCATGCTCATTCATCAATTTATAACGTTCGGATTCGCG 1004
Query 121 TCTACACCGTTATATTTTGTGTGGGAAAAATTGATAGGTGTGCATGAGACGAAGAGCATG 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1005 TCTACACCGTTATATTTTGTGTGGGAGAAATTGATAGGTGTGCATGAGACGAAGAGCATG 1064
Query 181 TTCAAAAGAGCCATGGCTAGATTACCCGTGGTTGTACCCATATGGTTCTTAGCCATTATC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1065 TTCAAAAGAGCCATGGCTAGATTACCCGTGGTTGTACCCATATGGTTCTTAGCCATTATC 1124
Query 241 TTCCCCTTTTTCGGACCAATCAATTCCGCCGTCGGATCTCTCTTAGTTAGCTTCACTGTA 300
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1125 TTCCCCTTTTTCGGACCAATCAATTCCGCGGTCGGATCTCTCTTAGTTAGCTTCACTGTC 1184
Query 301 TACATCATCCCCGCATTGGCTCATATGCTTACCTTTGCTCCTGCTCCTTCAAGAGAGAAC 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 TACATCATCCCCGCATTGGCTCATATGCTTACCTTTGCTCCTGCTCCTTCAAGAGAGAAT 1244
Query 361 GCGGTGGAGAGACCACCGCGAGTGGTGGGAGGATGGATGGGGACTTATTGCATAAACATA 420
||||||||||| |||||| ||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1245 GCGGTGGAGAGGCCACCGAGAGTGGTAGGAGGATGGATGGGGACTTACTGCATAAACATA 1304
Query 421 TTTGTGGTGGTTTGGGTATTCGTAGTTGGGTTCGGGTTCGGAGGATGGGCAAGTATGGTC 480
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1305 TTTGTGGTGGTTTGGGTATTCGTAGTTGGGTTCGGGTTTGGAGGATGGGCAAGTATGGTC 1364
Query 481 AACTTTGTTCGCCAGATCGACACTTTTGGTCTCTTTACTAAATGCTACCAATGCCCTCCT 540
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1365 AACTTTGTTCGCCAGATCGACACTTTTGGTCTCTTTACCAAATGCTACCAATGCCCTCCT 1424
Query 541 CACAAGCCATGA 552
||||||||||||
Sbjct 1425 CACAAGCCATGA 1436
> AT2G38120.1 | Symbols: AUX1, WAV5, PIR1, MAP1 | Transmembrane
amino acid transporter family protein | chr2:15972993-15977180
FORWARD LENGTH=2135
Length=2135
Score = 263 bits (142), Expect = 1e-69
Identities = 372/479 (78%), Gaps = 32/479 (7%)
Strand=Plus/Plus
Query 71 CCGCAGTGATCCTCATGCTCATTCATCAGTTTATAACATTCGGATTCGCATCTACACCGT 130
|||| || ||||||||||||||||||||||||||||| ||||| ||||| | |||||| |
Sbjct 1227 CCGCTGTTATCCTCATGCTCATTCATCAGTTTATAACGTTCGGGTTCGCTTGTACACCTT 1286
Query 131 TATATTTTGTGTGGGAAAAATTGATAGGTG-TGCATGAGACGAAGAGCATGTT-CAAAAG 188
| || ||||||||||| ||| |||| || | ||||||| || |||||||| || | |||
Sbjct 1287 TGTACTTTGTGTGGGAGAAAGTGATTGG-GATGCATGACACAAAGAGCAT-TTGCTTAAG 1344
Query 189 AGCCATGGCTAGATTACCCGTGGTTGTACCCATATGGTTCTTAGCCATTATCTTCCCCTT 248
|| |||||||||| || ||||| |||| || ||||||||||| ||||||||||||||
Sbjct 1345 GGCTTTGGCTAGATTGCCTGTGGTCATACCTATTTGGTTCTTAGCTATTATCTTCCCCTT 1404
Query 249 TTTCGGACCAATCAATTCCGCCGTCGGAT-CTCT-CTTAGTTAGCTTCACTGTATACATC 306
|||||| |||||||||||||| ||||| | |||| ||| ||||||||||| || || |||
Sbjct 1405 TTTCGGTCCAATCAATTCCGCTGTCGG-TGCTCTTCTT-GTTAGCTTCACCGTCTATATC 1462
Query 307 ATCCCCGCAT-TGGCTCATATGCTTACCTTTGC--TCCTGC-TCCT-TCAAGAGAGAACG 361
||||| | | | ||||| ||||| || || | || ||| ||| || | |||| |
Sbjct 1463 ATCCCATC-TCTCGCTCACATGCTCAC-TTACCGATC-TGCCTCCGCTC--GTCAGAATG 1517
Query 362 CGGTGGAGA-GACCACCGCGAGTGGTGG-GAGGATGGATGGGGACT-TAT-TGCATAAAC 417
||| ||||| | |||||| | || ||| |||| || || | || || | ||
Sbjct 1518 CGGCGGAGAAG-CCACCGTTCTTTATGCCGAGC-TGGACGGCGA-TGTACGTGT-TGAAT 1573
Query 418 ATATTT-GTGGTGGTTTGGGTA-TTCGTAGTTGGGTTCGGGTTCGGAGGATGGGCAAGTA 475
||| |||||||||||||| || |||| || || |||||||| |||||||| |||
Sbjct 1574 GC-TTTCGTGGTGGTTTGGGTTCTTA-TAGTCGGATTTGGGTTCGGTGGATGGGCTAGTG 1631
Query 476 TGGTCAACTTTGTTCGCCA-GATCGACACTTTTGGTCTCTTTACTAAATGCTACCAATG 533
| |||||||||||| || | |||||||||||||||||||| | || || ||||||||
Sbjct 1632 TAACCAACTTTGTTCGTCAAG-TCGACACTTTTGGTCTCTTTGCCAAGTGTTACCAATG 1689
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26473395469
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5