BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918703
Length=309
Score E
Sequences producing significant alignments: (Bits) Value
AT3G10380.1 | Symbols: SEC8, ATSEC8 | subunit of exocyst comple... 532 5e-151
> AT3G10380.1 | Symbols: SEC8, ATSEC8 | subunit of exocyst complex
8 | chr3:3219523-3228933 REVERSE LENGTH=3814
Length=3814
Score = 532 bits (288), Expect = 5e-151
Identities = 302/309 (98%), Gaps = 0/309 (0%)
Strand=Plus/Plus
Query 1 GCTTTGGCTGACATGAGATCTATCAACCTTTTCGGGGTTCAACAAATATGTCGGAACACT 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 3107 GCTTTGGCTGACATGAGATCAATCAACCTTTTCGGGGTTCAACAAATATGTCGGAACACT 3166
Query 61 ATTGCAGTGGAACAGGCCATGGCAGCTATTCCATATATCGATAGTGAAACCGTACAACAG 120
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 3167 ATTGCAGTGGAACAGGCCATGGCAGCTATTCCATATATCGATGGTGAAACCGTACAACAG 3226
Query 121 AACCTAGATCGTGTCCGTACTTACTTTGAACTGTTAAACATGCCATTCGAAGCATTGCTC 180
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 3227 AACCTAGATCGTGTCCGTACTTACTTTGAGCTATTAAACATGCCATTCGAAGCATTGCTC 3286
Query 181 GCTTTCATAGCAGAACACGACCAAATGTTTACACCCACAGAGTATTCCAATCTTCTGAAG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3287 GCTTTCATAGCAGAACACGACCAAATGTTTACACCCACAGAGTATTCCAATCTTCTGAAG 3346
Query 241 GTCAATGTTCCTGGAAGAGATACCCCTTCAGATGCTCAATCACGCCTTTTGGAAATTCTT 300
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 3347 GTCAATGTTCCTGGAAGAGATACTCCTTCAGATGCTCAATCCCGCCTTTTGGAAATTCTT 3406
Query 301 TCTCACTAA 309
||||| |||
Sbjct 3407 TCTCATTAA 3415
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14326308465
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5