BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918705
Length=1209
Score E
Sequences producing significant alignments: (Bits) Value
AT3G10360.1 | Symbols: APUM4, PUM4 | pumilio 4 | chr3:3210884-3... 1930 0.0
> AT3G10360.1 | Symbols: APUM4, PUM4 | pumilio 4 | chr3:3210884-3215556
REVERSE LENGTH=3692
Length=3692
Score = 1930 bits (1045), Expect = 0.0
Identities = 1150/1202 (96%), Gaps = 2/1202 (0%)
Strand=Plus/Plus
Query 1 ATGGTGACTGATAGCTACATGGATACGAGATCAAATTTGACAAGTGTGAATCGAGGATCC 60
||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 289 ATGGTTACTAATAGCTACATGGATACGCGATCAAATTTGACAAGTGTGAATCGAGGATCC 348
Query 61 AATGTGGATCTCGAGGATCGATTCCAGAGGGAGCTCGAATCTTTGCTCCAACAACATCGT 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 349 AATGTGGATCTCGAAGATCGATTCCAGAGGGAGCTCGAATCTTTGCTCCAACAACATCGT 408
Query 121 AATCGGCAAACATTTGGCCGAGAGA-GAGAACGAGACATTGATGTTCACAGAAGCGGAAG 179
|||| |||| ||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 409 AATCAGCAATCATTTGGCCGAGA-ACGAGAACGAGACATTGATGTTCACAGAAGCGGAAG 467
Query 180 CGCGCCTCCTACGGTGGAAGGTTTGTTGAGGGCTATGGATAATCAGTACTGGAACAATAA 239
|||||||||||| |||||||| |||||||| ||||||||||||||||||| |||||||||
Sbjct 468 CGCGCCTCCTACCGTGGAAGGATTGTTGAGAGCTATGGATAATCAGTACTTGAACAATAA 527
Query 240 TAACTCTGATCATAGAGATGTTGGGAATGTTAACAGTTTTAGCACTAGCAATGGCGTTGA 299
||||||||||||||||||||||||||| ||| |||| | | ||||||||||||||||||
Sbjct 528 CAACTCTGATCATAGAGATGTTGGGAATATTAGCAGTATAACCACTAGCAATGGCGTTGA 587
Query 300 GCTTTTGTCTGATGATGAGCTACGTTGGCACCCTGAGTATCTCTCTTATTACTATTCGAA 359
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 588 GCTTTTATCTGATGATGAGTTACGTTGGCACCCTGAGTATCTCTCTTATTACTATTCGAA 647
Query 360 TGAACATTCCAATCCGAGGTTGCCTCCTCCGTTGTTGTCTAGAGAGGATTGGAGGGTTGC 419
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 648 TGAGCATTCGAATCCGAGGTTGCCTCCTCCGTTGTTGTCTAGAGAGGATTGGAGGGTTGC 707
Query 420 TCAGAGGTTTCACAACAGTGAGTCTGTGTTTGATCCTGTTGGGGAATGGAGGAAGAAAGC 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 708 TCAGAGGTTTCACAACAGTGAGTCTGTGTTTGATCCTGTTGGGGAATGGAGGAAGAAAAC 767
Query 480 GGTTGAAGTCGACAACTCCTCATCGCTCTTCTCGGTTCAGCCAGGGGTTCCAGTTGAGCA 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 768 GGTTGAAGTCGACAACTCCTCATCGCTCTTCTCGGTTCAGCCAGGGGTTCCAGTTGAGCA 827
Query 540 GGCAGAGAATGATTTGATGGAACTGAGGAATGCTGTAGCTCAGGGCCGCTCTCAGAAGGT 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 828 GGCAGAGAATGATTTGATGGAACTGAGGAATGCTGTAGCTCAGGGCCGCTCTCAGAAGGT 887
Query 600 GCAGCGGCTAGATCAAGGCAGAGAAGATTTTATTGGATTATCTGGATATCCTGGGCTTGG 659
||||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||
Sbjct 888 GCAGCGGCTAGATCAAGGCAGAGAAGACTTGATTGGATTATCTGGATATTCTGGGCTTGG 947
Query 660 ACCGAGAAGGAAGAGTTTCGCCGATATACTTCAGGAAGGACTTGAACGGGATGCAACCTT 719
|||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||
Sbjct 948 ACCGAGAAGGAAGAGTTTTGCTGATATACTTCAGGAAGGACTTGAACGGGATGCAGCCTT 1007
Query 720 AGGCAGCCAACTCTCTCGGCCTGCAAGCTGCAACACTTTTCGGGACATGAAAGATTCTGC 779
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 1008 AGGCAGCCAACTCTCTCGGCCTGCAAGCTGCAACACTTTTCGGGATATGAAAGATGCTGC 1067
Query 780 TGTTTTATCGAATTTCAGTGCTGGTGGATTCGACAGCCCATTAGCATTCCATGAATCATT 839
||||||||| ||||||||||| |||||||| ||||||||||||||||||||||| |||||
Sbjct 1068 TGTTTTATCAAATTTCAGTGCCGGTGGATTTGACAGCCCATTAGCATTCCATGATTCATT 1127
Query 840 ACATGCTACTGCCAAAAACAGTCCAAATACTATGCTTGGCTCCACCACGAGTTCCCCAGT 899
|||| |||||||||||||||||||||||||||||||||| ||||||| |||||| || ||
Sbjct 1128 ACATTCTACTGCCAAAAACAGTCCAAATACTATGCTTGGATCCACCATGAGTTCTCCGGT 1187
Query 900 GCCAAGAAATAGAACTCCTGACTCACATCTAGTAGGGCGATCTCCGGCCTCTGGCCTTCC 959
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 1188 GCCAAGAAATAGAACTCCTGACTCACATCTAGTAGGACGATCTACGGCCTCTGGCCTTCC 1247
Query 960 CCCTATTGGTACCAGGGTCGGTCCTGTCGAGAAAAAGAATACTTTTGGCACAGCCATCCA 1019
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1248 CCCTATTGGTACCAGGGTTGGTCCTGTCGAGAAGAAGAATACTTTTGGCACAGCCATCCA 1307
Query 1020 AAACTCTGAATCTTACACTGCTGCCGATGTTGCCGACACATTGTCGAGGTTGAGCATGTC 1079
||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 1308 AAACTGTGAATCTTACACTGCTGCCGATGTTGCCGACACATTGTCCAGGTTGAACATGTC 1367
Query 1080 AGAGATGAGTCAAGTAAAAGCCCACCATATGCAGTCACAGCTTCAAGTGGAATTGGAGAA 1139
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 1368 AGAGATGAGTCAAGTAAAAGAAAACCATATGCAGTCACAGCTTCAAGTGGAACTGGAGAA 1427
Query 1140 TCAATCTGATGTCATGCGTTACATACCCAATGGTCATAAGAAGGCTTTGCGGCAACAAGA 1199
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1428 TCAATCTGATGTCATGCGTTACATACCCAATGGTCATAAGAAGGCTTTGCGGCAACAAAA 1487
Query 1200 TA 1201
||
Sbjct 1488 TA 1489
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59387244735
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5