BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918706
Length=639
Score E
Sequences producing significant alignments: (Bits) Value
AT3G04170.1 | Symbols: | RmlC-like cupins superfamily protein ... 885 0.0
AT3G04180.1 | Symbols: | RmlC-like cupins superfamily protein ... 455 3e-127
AT3G04190.1 | Symbols: | RmlC-like cupins superfamily protein ... 449 1e-125
> AT3G04170.1 | Symbols: | RmlC-like cupins superfamily protein
| chr3:1094621-1095665 REVERSE LENGTH=877
Length=877
Score = 885 bits (479), Expect = 0.0
Identities = 591/643 (92%), Gaps = 16/643 (2%)
Strand=Plus/Plus
Query 1 GCTTTAGCATCTTCGTTTGTATATTGTTACGACCCATCTCCTCTTCAAGACTACTGTGTT 60
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 95 GCTTTAGCATCTTCGTTTGTCTCTTGTTACGACCCATCTCCTCTTCAAGACTACTGTGTT 154
Query 61 GCCA-CCAACGAAACTAAA-GGAGTTTTCGTAAATGGAAGA-TTCTGCAAAGATCCAAAA 117
||| || ||||| ||| |||||||||||||||||| || ||||||||||||||||||
Sbjct 155 GCCGTCCC-CGAAAA-AAACGGAGTTTTCGTAAATGGA-GAATTCTGCAAAGATCCAAAA 211
Query 118 CTAGTAACATCCA-ATGATTTCTTTGCTTCTGGACTTAACATCCCGGGAAACACCAGCAA 176
||||||||||| | ||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 212 CTAGTAACATC-AGATGATTTCTTTGCTTCTGGCCTTAACATCCCGGGAAACACCAACAA 270
Query 177 CCGCCTTGGCTTCTTTGTCAACCCCGCTAATATCCCTGGTTTCAACACTCTTGGGGTCGC 236
|||||||||| |||||| ||||||||||||||||| ||| ||||||||||||||||||
Sbjct 271 ACGCCTTGGCTCCTTTGTGAACCCCGCTAATATCCCCGGTCTCAACACTCTTGGGGTCGG 330
Query 237 CATCGCCCGCATTGACTTTGCCCCTGGTGGTCAAATCCCACCGCACATACATCCACGCGC 296
||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 331 CATCGCCCGTATTGACTTTGCCCCTGGTGGTCTAATCCCACCGCACATACATCCACGCGC 390
Query 297 CTCCGAGATCCTCCTAGTCATCAAGGGCAAGCTCCTAGTCGGTTTTGTGTCGTCGAACGA 356
|||||||||| || ||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 391 CTCCGAGATCATCTTAGTCATCAAGGGAAAGCTCCTAGTCGGTTTTGTATCGTCGAACGA 450
Query 357 GTACAACTACACACTTTTCTCCAAAATTCTTTATCCGGGAGATGTATTTGTTT-TCCCCA 415
|||||||||||||| |||||||||||||||||||| |||||||| |||||| |||| |
Sbjct 451 CTACAACTACACACTCTTCTCCAAAATTCTTTATCCCGGAGATGTGTTTGTTCATCCC-A 509
Query 416 TCGGATTGGTACAATTTCATGCAAACATAGGGAAGAAAAATGCGATTGCGATTGGGGCGG 475
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 510 TCGGATTGGTACAATTTCATGCAAACATAGGGAAGACAAATGCGGTTGCGATTGGGGCGG 569
Query 476 TTGGGAGCCAAAATCCTGGTT-TCATCTCGGTAGGTGATGCAGTTTTCGGGTCGAGGCCT 534
||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||
Sbjct 570 TTGGGAGCCAAAATCCTGGTTAT-ATCTCGGTAGGTGATGCAGTTTTCGGGTCGAAGCCT 628
Query 535 TCGATTGATCCAAAGATTTTATCTAAAGCTTTTGCGTTGGATATCAACATAGTGAGATAT 594
||||||| ||||||||||| ||||||||||||||||||| ||||| ||||| ||||||
Sbjct 629 CCGATTGACCCAAAGATTTTGGCTAAAGCTTTTGCGTTGGACATCAATATAGTAAGATAT 688
Query 595 CTTCGGACAGTACTGTTTTCTCCTCAAGATGATATCGTTGAAT 637
||||| | ||| ||||||||||||||||||||||||| |||
Sbjct 689 CTTCGAAAAGT---GTTTTCTCCTCAAGATGATATCGTT-AAT 727
> AT3G04180.1 | Symbols: | RmlC-like cupins superfamily protein
| chr3:1097475-1098422 REVERSE LENGTH=819
Length=819
Score = 455 bits (246), Expect = 3e-127
Identities = 509/630 (81%), Gaps = 41/630 (7%)
Strand=Plus/Plus
Query 1 GCTTTAGCATCTTCGTTTGTATATTGTTACGACCCATCTCCTCTTCAAGACTACTGTGTT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 153 GCTTTAGCATCTTCGTTTGTATATTGTTACGACCCATCTCCTCTTCAAGACTACTGTGTT 212
Query 61 GCCACCAACGAAACTAAAGGAGTTT-TCGTAAATGGA-AGATTCTGCAAAGATCCAAAAC 118
||||||||||||||||| ||||||| | ||||||||| || |||||||||||||||||||
Sbjct 213 GCCACCAACGAAACTAATGGAGTTTAT-GTAAATGGAGAG-TTCTGCAAAGATCCAAAAC 270
Query 119 -TAGTAACATCCAATGATTTCTT-TGCTTCTGGACTTAACATCCCGGGAAACACCAGCAA 176
| |||||| |||||||||| || | |||| || || ||| |||| |||||||||| ||
Sbjct 271 GT-GTAACAACCAATGATTT-TTATACTTCCGGCCTAAACGTCCCCGGAAACACCATCAT 328
Query 177 CCG-CCTTGGCTTCTTTGTCAACCCCG-C-TA-ATATC------C--C-TGGTTTCAACA 223
| | || ||| || | ||| ||| | | || || | | |||| ||||||
Sbjct 329 CGGGCCC-GGCG-CTA-GA-AACACCGTCGTGGATGTCGAAAGACTGCCTGGTCTCAACA 384
Query 224 CTCTTGGGGTCGCCATCGCCCGC-ATTGACTTTGCCCCTGGTGGTCAA-ATCCCACCGCA 281
|||||||||||| ||| |||||| || ||||||||||| || |||| | | |||||| ||
Sbjct 385 CTCTTGGGGTCGACATTGCCCGCTAT-GACTTTGCCCCGGGCGGTCTAGA-CCCACCTCA 442
Query 282 CATACATCCACGCGCCT-CCGAGATCCTCCTAGTCATCAAGGGCAAGCTCCTAGTCGGTT 340
|| ||| || || | | || ||||| || ||||||| ||||||||||| | || ||||
Sbjct 443 CACACACCCGCGTGGCAGCC-AGATCTTCTTAGTCATGAAGGGCAAGCTTTTCGTTGGTT 501
Query 341 TTGTGTCGTCGAACGAGTACAACTACACACTTTTCTCCAAAATTCTTTATCCGGGAGATG 400
|||||||||| || || ||||||||||| || ||| ||||| ||||||||||||||||||
Sbjct 502 TTGTGTCGTCAAATGAATACAACTACACGCTCTTCACCAAAGTTCTTTATCCGGGAGATG 561
Query 401 TATTTGT-TTTCCCCATCGGATTGGTACAATTTCATGCAAACATAGGGAAGAAAAATGC- 458
||||||| |||||| | || ||| |||| |||||||| || || ||| ||| ||||||
Sbjct 562 TATTTGTGTTTCCCAAA-GGTTTGATACATTTTCATGCGAATATTGGGGAGACAAATGCC 620
Query 459 GATTGCGATTGGGGCGGTTGGGAGCCAAAATCCTGGTTTCATC-TCGGTAGGTGATGCAG 517
| ||| |||| |||| |||||||||| | || ||| ||| | |||||||||| |
Sbjct 621 G-TTGTGATTTCTGCGGGTGGGAGCCAAGACCCCGGTAGGATCATAA-TAGGTGATGCGG 678
Query 518 TTTTCGGGTCGAGGCCTTCGATTGATCCAAAGATTTTATCTAAAGCTTTTGCGTTGGA-T 576
||||||| || | |||| ||||||||| ||| |||| ||||||||||||||||||| |
Sbjct 679 TTTTCGGATCAAAACCTTTGATTGATCCCAAGGTTTTGGCTAAAGCTTTTGCGTTGGACT 738
Query 577 ATCAACATAGTGAGATATCTTC-GGACAGT 605
| ||||| ||||| |||||||| || ||||
Sbjct 739 A-CAACAAAGTGAAATATCTTCAGG-CAGT 766
> AT3G04190.1 | Symbols: | RmlC-like cupins superfamily protein
| chr3:1101878-1102763 REVERSE LENGTH=767
Length=767
Score = 449 bits (243), Expect = 1e-125
Identities = 505/627 (81%), Gaps = 35/627 (6%)
Strand=Plus/Plus
Query 1 GCTTTAGCATCTTCGTTTGTATATTGTTACGACCCATCTCCTCTTCAAGACTACTGTGTT 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 62 GCTTTAGCATCTTCGTTTGTATATTGTTACGAACCATCTCCTCTTCAAGACTACTGTGTT 121
Query 61 GCCACCAACGAAACTAAAGGAGTTT-TCGTAAATGGAA-GATTCTGCAAAGATCCAAAAC 118
||||||||||||||||| ||||||| | |||||||||| | ||||||||||||||||||
Sbjct 122 GCCACCAACGAAACTAATGGAGTTTAT-GTAAATGGAAAG-TTCTGCAAAGATCCAAAAT 179
Query 119 -TAGTAACATCCAATGATTTCTTTG-CTTCTGGACTTAACAT-CCCGGGAAACACCAGCA 175
| ||||| | |||||||| || |||| || || ||| | ||||| ||| |||||||
Sbjct 180 GT-GTAACGGCGAATGATTT-TTACACTTCCGGCCTAAACGTTCCCGG-AAATACCAGCA 236
Query 176 ACCG--CCTTGGCTTCTTTGTCAACCC-CGC---T---AATA---TCCCTGGTTTCAACA 223
||| || ||| || ||| || || | || | | |||||| ||||||
Sbjct 237 -CCGGTCCG-GGCGTCAAAATCA-CCGTCGTGGATGTCAAAAGAATGCCTGGTCTCAACA 293
Query 224 CTCTTGGGGTCGCCATCGCCCGCATTGACTTTGCCCCTGGTGGTCAA-ATCCCACCGCAC 282
|||||||||||| ||| |||||||||||||| ||||| || |||| | | |||||| |||
Sbjct 294 CTCTTGGGGTCGACATTGCCCGCATTGACTTCGCCCCGGGCGGTCTATA-CCCACCTCAC 352
Query 283 ATACATCCACGCGCCTCCGAGATCCTCCTAGTCATCAAGGGCAAGCTCCTAGTCGGTTTT 342
| || ||||| | | ||||||| || ||||||| ||||||||||| | || || |||
Sbjct 353 ACCCACCCACGTGGCAGCGAGATCTTCTTAGTCATGAAGGGCAAGCTTTTCGTTGGATTT 412
Query 343 GTGTCGTCGAACGAGTACAACTACACACTTTTCTCCAAAATTCTTTATCCGGGAGATGTA 402
|||||||||||||| ||||||||||| || ||| ||||| ||||||||||||||||||||
Sbjct 413 GTGTCGTCGAACGAATACAACTACACGCTCTTCACCAAAGTTCTTTATCCGGGAGATGTA 472
Query 403 TTTGT-TTTCCCCATCGGATTGGTACAATTTCATGCAAACATAGGGAAGAAAAATGCGAT 461
||||| |||||| | || ||| ||||||||||||| || || || |||| ||||||| |
Sbjct 473 TTTGTGTTTCCCAAA-GGTTTGATACAATTTCATGCGAATATTGGAAAGACAAATGCGGT 531
Query 462 TGCGATTGGGGCGGTTGGGAGCCAAAATCCTGGTTTCATC-TCGGTAGGTGATGCAGTTT 520
|| ||||| || |||||||||||| || ||| ||| | ||||| |||| ||||
Sbjct 532 TGTGATTGCTGCAACTGGGAGCCAAAACCCCGGTAGGATCATAA-TAGGTAATGCGGTTT 590
Query 521 TCGGGTCGAGGCCTTCGATTGATCCAAAGATTTTATCTAAAGCTTTTGCGTTGGA-TATC 579
|||| |||| |||| ||||||||| ||| |||| ||||||||||||||||||| | ||
Sbjct 591 TCGGATCGAAACCTTTGATTGATCCCAAGGTTTTGGCTAAAGCTTTTGCGTTGGACT-TC 649
Query 580 AACATAGTGAGATATCTTC-GGACAGT 605
|||| ||||| |||| ||| || ||||
Sbjct 650 AACAAAGTGAAATATTTTCAGG-CAGT 675
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30843766258
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5