BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918707
Length=402
Score E
Sequences producing significant alignments: (Bits) Value
AT3G03720.1 | Symbols: CAT4 | cationic amino acid transporter 4... 363 1e-99
AT2G38980.1 | Symbols: | pseudogene, similar to fiber protein ... 204 6e-52
AT3G04184.1 | Symbols: | unknown protein; Has 30201 Blast hits... 163 1e-39
AT2G43830.1 | Symbols: | pseudogene, NPK1-related protein kina... 124 5e-28
AT2G43930.1 | Symbols: | Protein kinase superfamily protein | ... 82.4 3e-15
> AT3G03720.1 | Symbols: CAT4 | cationic amino acid transporter
4 | chr3:925612-930974 REVERSE LENGTH=2664
Length=2664
Score = 363 bits (196), Expect = 1e-99
Identities = 231/246 (94%), Gaps = 9/246 (4%)
Strand=Plus/Plus
Query 162 GGTTTCTCTGCCCATTCGTCCCATACCTTCCAGTTCTTTGCATATTGATCAACACCTACT 221
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2183 GGTTTCTCTGCCCATTCGTCCCATACCTTCCAGTTCTTTGCATTTTGATCAACACCTACT 2242
Query 222 TGATCATCAACATTGGAGCTGGGACATGGATCAGGGTCTTGGTATGGCTACTTATTGGAA 281
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2243 TGATCATCAACATTGGAGCTGGGACATGGATCAGGGTCTTGATATGGCTACTTATTGGAA 2302
Query 282 GCATGATCTATCTCTTCTATGGCCGATCTCACAGCTTACTGAACAATGCGGTTTAC---- 337
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2303 GCATGATCTATATCTTCTATGGCCGATCTCACAGCTTACTGAACAATGCGGTTTACGTTC 2362
Query 338 --AC---GACTTGTACCAGAAAAACAACAGATCATCTTGCTTAAGATTGGTGGTTCAATG 392
|| ||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2363 CCACAATGACTTGTACGAGAAAAACAACAGATCATCTTGCTTAAGATTGGTGGATCAATG 2422
Query 393 CAGCAG 398
| ||||
Sbjct 2423 CTGCAG 2428
> AT2G38980.1 | Symbols: | pseudogene, similar to fiber protein
Fb12, blastp match of 53% identity and 1.2e-13 P-value to
GP|25992543|gb|AAN77151.1||AF531371 fiber protein Fb12 {Gossypium
barbadense} | chr2:16277009-16279354 REVERSE LENGTH=2346
Length=2346
Score = 204 bits (110), Expect = 6e-52
Identities = 151/169 (89%), Gaps = 9/169 (5%)
Strand=Plus/Plus
Query 237 GAGCTGGGACATGGATCAGGGTCTTGGTATGGCTACTTATTGGAAGCATGATCTATCTCT 296
|||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||
Sbjct 2006 GAGCTGGGACATGGATCAGGGTCTTGGTATCGCTACTTATCGGAAGCATGATCTGTCTCT 2065
Query 297 TCTATGGCCGATCTCACAGCTTACTGAACAATGCGGTTTAC-----A-C---GACTTGTA 347
||| ||||||||||||| | || |||||||||| ||||||| | | ||||||||
Sbjct 2066 TCTGTGGCCGATCTCACTGTTTGCTGAACAATGTGGTTTACGTTCCAACAACGACTTGTA 2125
Query 348 CCAGAAAAACAACAGATCATCTTGCTTAAGATTGGTGGTTCAATGCAGC 396
|||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2126 CCAGAAAAACAACAGATCATCTTGCTTAAGATTGGTGGTTTAATGCAGC 2174
Score = 176 bits (95), Expect = 1e-43
Identities = 112/120 (93%), Gaps = 2/120 (2%)
Strand=Plus/Plus
Query 7 GCACTTGGACATGGAAATGTTACATCTGAACCACATA--GTGCTTCTGCTGCAATGTCAT 64
|||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 1119 GCACTTGGACATGGAAATGTTACATCTGAACCCCATATTGTGCTTCTGCTGCAATGTCAT 1178
Query 65 CTTCAATTCTTCTCCTACCTTCATTAGCTATTAGTAAGCCAAAACTGTCCCAAGGTTCAA 124
|||||| |||||||||||||||| |||||||||||||||| ||||||||| ||||||||
Sbjct 1179 CTTCAACTCTTCTCCTACCTTCAAAAGCTATTAGTAAGCCACAACTGTCCCGAGGTTCAA 1238
Score = 130 bits (70), Expect = 1e-29
Identities = 74/76 (97%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 162 GGTTTCTCTGCCCATTCGTCCCATACCTTCCAGTTCTTTGCATATTGATCAACACCTACT 221
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1851 GGTTTCTCTGCTCATTCGTCCCATACCTTCCAGTTCTTTGCATTTTGATCAACACCTACT 1910
Query 222 TGATCATCAACATTGG 237
||||||||||||||||
Sbjct 1911 TGATCATCAACATTGG 1926
> AT3G04184.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:1100085-1100246
REVERSE LENGTH=162
Length=162
Score = 163 bits (88), Expect = 1e-39
Identities = 128/145 (88%), Gaps = 12/145 (8%)
Strand=Plus/Plus
Query 243 GGA-CATGGA-TCAGGGTCTTGGTATGGCTACTTATTGGAAGCATGATCTATCTCTTCTA 300
||| || ||| |||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 19 GGATCAGGGATTCAGGGTCTTGGTATGGCTATTTACTGGAAGCATGATCTATCTCTTCTA 78
Query 301 TGGCCGATCTCACAGCTTACTGAACAATGCGGTTTAC-----A-CGAC---TTGTACCAG 351
||||||||||||||||||||||||||||| ||||||| | |||| ||| |||||
Sbjct 79 TGGCCGATCTCACAGCTTACTGAACAATGTGGTTTACGTTCCAACGACGACTTGAACCAG 138
Query 352 AAAAACAACAGATCATCTTGCTTAA 376
|||| ||||||||||||||||||||
Sbjct 139 AAAA-CAACAGATCATCTTGCTTAA 162
> AT2G43830.1 | Symbols: | pseudogene, NPK1-related protein kinase
3, identical to NPK1-related protein kinase 3 (GI:2342427)
(Arabidopsis thaliana);; blastp match of 91% identity and
2.1e-09 P-value to GP|456309|dbj|BAA05648.1||D26601 protein
kinase {Nicotiana tabacum} | chr2:18154542-18156488 REVERSE
LENGTH=1947
Length=1947
Score = 124 bits (67), Expect = 5e-28
Identities = 78/83 (94%), Gaps = 2/83 (2%)
Strand=Plus/Plus
Query 7 GCACTTGGACATGGAAATGTTACATCTGAACCACATA--GTGCTTCTGCTGCAATGTCAT 64
|||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||
Sbjct 711 GCACTTGGACATGGAAATGTTACATCTGAACCCCATATAGTGCTTCTGCTCCAATGTCAT 770
Query 65 CTTCAATTCTTCTCCTACCTTCA 87
|||||| ||||||||||||||||
Sbjct 771 CTTCAACTCTTCTCCTACCTTCA 793
> AT2G43930.1 | Symbols: | Protein kinase superfamily protein
| chr2:18193151-18195582 FORWARD LENGTH=652
Length=652
Score = 82.4 bits (44), Expect = 3e-15
Identities = 53/57 (93%), Gaps = 2/57 (4%)
Strand=Plus/Plus
Query 7 GCACTTGGACATGGAAATGTTACATCTGAACCACATA--GTGCTTCTGCTGCAATGT 61
|||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||
Sbjct 197 GCACTTGGACATGGAAATGTTACATCTGAACCCCATATAGTGCTTCTGCTCCAATGT 253
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19001209122
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5