BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918714
Length=717
Score E
Sequences producing significant alignments: (Bits) Value
AT5G42210.1 | Symbols: | Major facilitator superfamily protein... 898 0.0
> AT5G42210.1 | Symbols: | Major facilitator superfamily protein
| chr5:16866040-16870887 FORWARD LENGTH=1677
Length=1677
Score = 898 bits (486), Expect = 0.0
Identities = 598/650 (92%), Gaps = 16/650 (2%)
Strand=Plus/Plus
Query 1 CTCGGTGCTCCTATTGTTATAAGCGAGACATTGAGTTCCT-CTTTACTTGAAGATTGTCC 59
||||||||||| |||||||||| |||| |||||||| || |||||||||||||||||||
Sbjct 639 CTCGGTGCTCCCATTGTTATAAATGAGAAATTGAGTT-CTCCTTTACTTGAAGATTGTCC 697
Query 60 TGGACATAGAAATAGAATATTTAGAGCAATTCATTCGGTGCGTGAAATGGCCTCTCTATT 119
|||||||||||||| |||||||||||||||| || ||| | ||||||||| |||||| |
Sbjct 698 AGGACATAGAAATAGGATATTTAGAGCAATTCGTTTGGTACATGAAATGGCTTCTCTAAT 757
Query 120 GAGAAGT---GTTCCATTTTTTCAAATTGCGATGGTATTATTCTGCAGTAGTCTTGCTGA 176
||||||| |||||| |||||||| |||||||||||| ||||| |||||||||||||||
Sbjct 758 GAGAAGTAGCGTTCCACTTTTTCAAGTTGCGATGGTATCATTCTTCAGTAGTCTTGCTGA 817
Query 177 GGCTGGTCTACATGCTTCATCTATGTACTATTTAAAGGCCAAGTTTCACTTTAACAAAGA 236
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 818 GGCAGGTCTACATGCTTCATCTATGTACTATTTAAAGGCCAAGTTTCACTTTAACAAAGA 877
Query 237 CCAGTTTGCAGACTTGATGATCATA-TCAGGCGCAACGGGATCTATTTCACAGTTGCTTT 295
||||||||||||||||||||||||| | |||||| | |||||||||||||||||||| |
Sbjct 878 CCAGTTTGCAGACTTGATGATCATAGTT-GGCGCATCTGGATCTATTTCACAGTTGCTCT 936
Query 296 TTATGCCCATTCTAGTTCCTGCTTTAAAAGAGGAGAGACTGCTCTCAATTGGTCTTTTCT 355
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 937 TTATGCCCGTTCTAGTTCCTGCTTTAAAAGAGGAGAGACTGCTCTCAATTGGTCTTTTCT 996
Query 356 TTGGTGGCGCCCATATGTTCTTGA-TATGTGTGGCATGGTCCTCATGGGTTCCATATATG 414
||||| | |||||||||||| | | |||||||||||||||||||||||||||||||||||
Sbjct 997 TTGGTTGTGCCCATATGTTCCT-ACTATGTGTGGCATGGTCCTCATGGGTTCCATATATG 1055
Query 415 GCAGCCATATTTTCACTTTTCTCAGTATTTCCA-CATTCATGTATGCGAAGCATTGTCTC 473
|||||||||||| ||||||||||| ||||||| ||| | ||||||||||||||||||||
Sbjct 1056 GCAGCCATATTTGCACTTTTCTCAATATTTCCTTCAT-CGTGTATGCGAAGCATTGTCTC 1114
Query 474 CAAACAAGTAGCATCATATGAACAGGGGAAAGCCCAAGGGATTATTTCAAGCATA-GATT 532
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||
Sbjct 1115 CAAACAAGTAGCATCATATGAACAGGGGAAAGCCCAAGGAATTATTTCAAGCATATG-TT 1173
Query 533 CCCTTGCAAATGTCATTTCCCCGCTTGCATTTTCACCTCTAACA--T-GGTTTCTATCTG 589
||||||||||||||||||||||||| |||||||||||||||||| | ||||||| ||||
Sbjct 1174 CCCTTGCAAATGTCATTTCCCCGCTAGCATTTTCACCTCTAACAGATTGGTTTCTGTCTG 1233
Query 590 AAAGGGCTCCATTTAATTTCCTAGGGTTCAGTATAATGTGTGCGGGGTTT 639
|||| || ||||||||||||| |||||||||||||||||||||||| |||
Sbjct 1234 AAAGAGCCCCATTTAATTTCCCAGGGTTCAGTATAATGTGTGCGGGATTT 1283
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34762029724
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5