BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918720
Length=1339
Score E
Sequences producing significant alignments: (Bits) Value
AT1G02205.3 | Symbols: CER1 | Fatty acid hydroxylase superfamil... 2073 0.0
> AT1G02205.3 | Symbols: CER1 | Fatty acid hydroxylase superfamily
| chr1:418748-422258 FORWARD LENGTH=2067
Length=2067
Score = 2073 bits (1122), Expect = 0.0
Identities = 1203/1243 (97%), Gaps = 2/1243 (0%)
Strand=Plus/Plus
Query 1 ATATTACATTCGACGGTATAATGGCCACAAAACCAGGAGTCCTCACCGATTGGCCTTGGA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 51 ATATTACATTCGACGGTATAATGGCCACAAAACCAGGAGTCCTCACCGATTGGCCTTGGA 110
Query 61 CACCCCTCGGGAGTTTCAAGTACATCGTAATAGCACCATGGGCTGTCCATAGCACATACA 120
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 111 CACCCCTCGGAAGTTTCAAGTACATCGTAATAGCACCATGGGCTGTCCATAGCACATACA 170
Query 121 GGTTTGTGACAGATGATCCGGAGAAGAGGGATCTCGGGTACTCCCTTGTATTCCCCTTCT 180
||||||||||||||||||| |||||||||||||||||||||| |||||| ||||| ||||
Sbjct 171 GGTTTGTGACAGATGATCCAGAGAAGAGGGATCTCGGGTACTTCCTTGTGTTCCCATTCT 230
Query 181 TGCTCTTCAGAATTCTGCACAACCAGGTTTGGATCTCTCTGTCCCGTTACTATACGTCCT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 231 TGCTCTTCAGAATTCTGCACAACCAGGTTTGGATCTCTCTGTCCCGTTACTATACGTCCT 290
Query 241 CGGGAAAGAGGCGCATCGTCGACAAGGGAATCGACTTCAATCAGGTCGACAGGGAGACCA 300
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 CGGGAAAGAGACGCATCGTCGACAAGGGAATCGACTTCAATCAGGTCGACAGGGAGACCA 350
Query 301 ACTGGGATGACCAAATATTGTTCAACGGAGTGCTGTTCTATACAGGCATCTGCCTGTTGC 360
|||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||
Sbjct 351 ACTGGGATGACCAAATATTGTTCAACGGAGTGCTGTTCTATATAGGCATCAACCTATTGC 410
Query 361 CGGAGGCCAAGCAACTTCCCTGGTGGAGAACTGACGGAGTGTTGATGGCAGCGCTTATTC 420
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 CGGAGGCCAAACAACTTCCCTGGTGGAGAACTGACGGAGTGTTGATGGCAGCGCTTATTC 470
Query 421 ATGCCGGACCGGTGGAGTTCCTCTATTATTGGCTCCACAAAGCTCTCCACCATCACTTTC 480
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 ACACCGGACCGGTGGAGTTCCTCTATTATTGGCTCCACAAAGCTCTCCACCATCACTTTC 530
Query 481 TTTATTCCCGTTACCATTCCCACCACCACTCCTCTATCGTCACTGAGCCCATCACTTCGG 540
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 531 TTTATTCCCGCTACCATTCCCACCACCACTCCTCTATCGTCACTGAGCCCATCACTTCGG 590
Query 541 TGATACATCCGTTTGCGGAGCACATAGCATACTTCGTGCTCTTCGCGATACCGCTACTTA 600
||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||
Sbjct 591 TGATACATCCGTTTGCGGAGCACATAGCATACTTCATCCTCTTCGCGATACCACTACTTA 650
Query 601 CGACGTTGCTAACAAAAACGGCGTCCAT-ATTGTCGTTCGCCGGATACATAATCTACATA 659
| ||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||
Sbjct 651 CCACGTTGCTAACAAAAACGGCGTCAATAATT-TCGTTCGCCGGATACATAATCTACATA 709
Query 660 GACTTCATGAACAACATGGGACACTGCAACTTCGAGCTAATCCCTAAGCGCCTTTTCCAC 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 710 GACTTCATGAACAACATGGGACACTGCAACTTCGAGCTAATCCCTAAGCGCCTTTTCCAC 769
Query 720 CTCTTTCCTCCCCTCAAGTTCCTCTGTTACACTCCCTCATTCCACTCGCTGCACCATACG 779
|||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||
Sbjct 770 CTCTTTCCTCCCCTCAAGTTCCTCTGTTACACCCCCTCATACCACTCGCTGCACCACACG 829
Query 780 CAGTTTCGGACCAACTACTCCCTCTTCATGCCCTTTTATGACTACATCTACGGCACAATG 839
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 830 CAGTTCCGGACCAACTACTCCCTCTTCATGCCCTTGTATGACTACATCTACGGCACAATG 889
Query 840 GATGAAAGCACGGATACGTTGTACGAGAAATCTCTAGAAAGAGGAGATGATAGAGTGGAC 899
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 890 GATGAAAGCACGGATACGTTGTACGAGAAAACTCTAGAAAGAGGAGATGATATAGTGGAC 949
Query 900 GTGGTGCACTTAACTCACCTGACGACTCCAGAGTCCATATACCATTTGCGCATTGGCTTG 959
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 950 GTGGTGCACTTAACTCACCTGACGACGCCAGAATCCATATACCATTTGCGCATTGGCTTG 1009
Query 960 GCCTCATTTGCCTCCTACCCCTTCTCTTATAGGTGGTTCATGCGCCTTTTGTGGCCTTTC 1019
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 1010 GCCTCATTTGCCTCCTACCCCTTCGCTTATAGATGGTTCATGCGCCTTTTGTGGCCTTTC 1069
Query 1020 ACCTCTCTCTCCATGATCTTCACGCTCTTCTACGCCCGCCTCTTTGTCGCTGAGAGAAAC 1079
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1070 ACCTCTCTCTCCATGATATTCACGCTCTTCTACGCCCGCCTCTTTGTCGCTGAGAGAAAC 1129
Query 1080 TCCTTCAAGAAGCTCAACTTGCAGTCTTGGATGATACCTAGATATAATCTACAGTACTTG 1139
|||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1130 TCCTTCAACAAGCTCAACTTGCAGTCTTGGGTGATACCTAGATATAATCTACAGTACTTG 1189
Query 1140 TTAAAATGGAGGAAAGACGCGATCAACAACATGATTGAGAAAGCGATACTGGAGGCAGAT 1199
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1190 TTAAAATGGAGGAAAGAAGCGATCAATAACATGATTGAGAAAGCGATACTGGAGGCAGAT 1249
Query 1200 AAAAAAGGAGTGAAGGTGCTTAGCCTGGGCCTCATGAACCAAG 1242
|| |||||||||||||||||||| ||||| |||||||||||||
Sbjct 1250 AAGAAAGGAGTGAAGGTGCTTAGTCTGGGTCTCATGAACCAAG 1292
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65913315585
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5