BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918727
Length=1517
Score E
Sequences producing significant alignments: (Bits) Value
AT1G02145.3 | Symbols: ALG12, EBS4 | homolog of asparagine-link... 2555 0.0
> AT1G02145.3 | Symbols: ALG12, EBS4 | homolog of asparagine-linked
glycosylation 12 | chr1:404600-408619 FORWARD LENGTH=1655
Length=1655
Score = 2555 bits (1383), Expect = 0.0
Identities = 1473/1517 (97%), Gaps = 4/1517 (0%)
Strand=Plus/Plus
Query 3 GATGCCGACGGATTCGAAAATGGCCAAGTTTCTTCAATCCTATGGATATGATTTGATTCT 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 27 GATGCCGACGGATTCGAAAATGGCCAAGTTTCTTCAATCCTATGGATATGATTTGATTCT 86
Query 63 GGGATCTGTAGCTGCAATTTATGTGGTCATGGCACCATATACTAAGGTGGAAGAGAGCTT 122
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 87 GGGATCTGTAGCTGCAATCTATGTGGTCATGGCACCATATACTAAGGTGGAAGAGAGCTT 146
Query 123 CAACGTACAGTCAATGCACGACATTCTTTACCATCGCCATCATTTGGACTCTTATGATCA 182
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 147 CAACGTTCAGTCAATGCACGACATTCTTTACCATCGCCATCATTTGGACTCTTATGATCA 206
Query 183 TTTGGAGTTCCCTGGTGTTGTCCCTCGAACTTTTATTGGAGCCTTCATTGTCTCTGTTTT 242
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 207 TTTGGAGTTCCCCGGTGTTGTCCCTCGAACTTTTATTGGAGCCTTCATAGTCTCTGTTTT 266
Query 243 TGCATCACCTGTTGTATCAATTATCAGCTGGCTTGGCTTCCCCAAGGTTTATAGCCTTGT 302
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 267 TGCATCACCTGTTGTATCAATTATCAGCTGCCTTGGCTTCCCCAAGGTTTATAGCCTTGT 326
Query 303 TGCAGCTCGTTTGGTGTTGGGCTGCATCATATTGTCCACACTAAGATTTTTCCGGATTCA 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 327 TGCAGCTCGTTTGGTGTTGGGCTGCATCATATTGTCCACACTAAGATTTTTCCGGATTCA 386
Query 363 GATAAGAAATAAGTTTGGACATCAAGTGGAAACTTTCTTTGTACTTTTCACCAGTCTTCA 422
||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 387 GATAAAAAAAAAGTTTGGAAATCAAGTGGAAACTTTCTTTGTACTTTTCACCAGTCTTCA 446
Query 423 GTTTCATTTTCTTTTCTACTGCACTCGTCCTCTACCTAATATTCTAGCTTTGGGATTAGT 482
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 447 GTTTCATTTTCTTTTCTACTGCACTCGTCCTCTTCCTAATATTCTAGCTTTGGGATTAGT 506
Query 483 TAATCTGGCATATGGTAATTGGTTAAAGGGAAACTTTTATCCAGCTTTGAGTTTCCTGAT 542
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 507 CAATCTGGCATATGGTAATTGGTTAAAGGGAAATTTTTATCCAGCTTTGAGTTTCCTGAT 566
Query 543 TTTTGCCACTGTAATCTTCAGATGCGATACGATGTTACTACTTGGGCCTATTGGTCTTGA 602
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 567 TTTTGCCACTGTAATCTTCAGATGCGATACGATGTTACTGCTTGGGCCTATTGGTCTTGA 626
Query 603 ACTTTTATTGACCAAATCGATCTCCTTCTGGAAAGCACTTAAGTATTGTGTTGGAACCGC 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 627 ACTTTTATTGACCAAATCGATCTCCTTCTGGAAAGCACTTAAGTATTGTGTTGGAACCGC 686
Query 663 TCTGTTGGCCGTAGGTCTTACCA-TTTCGGTTGACTCTATCATGTGGAAGAAGTGTGTCT 721
||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||
Sbjct 687 TCTGTTGGCCGTAGGTCTTACCATTTTC-GTTGACTCTATCATGTGGAAGAAGTTTGTCT 745
Query 722 GGCCAGAATTTGAAGTTTTCTGGTTTAACTCCATTCTAAACCGGAGTTCTGACTGGGGTA 781
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 746 GGCCAGAATTTGAAGTTTTCTGGTTTAACTCCATTCTAAACCGGAGTTCTGATTGGGGTA 805
Query 782 CACATTCCATACATTGGTACTTCACCTCGGCACTCCCACGGTCTTTACTTGTAGCTTATC 841
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 806 CACATTCCATACATTGGTACTTCACCTCAGCACTCCCACGGTCTTTACTTGTAGCTTATC 865
Query 842 CACTTTCATTGCTTGGTACTTTGGTTGACAGGAGGGTTCCATTCTTTATTCTTCCAGTTT 901
|||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||
Sbjct 866 CACTTTCATTGCTTGGTACTTTAGTTGACAGAAGGGTTCCATTCTTTATAGTTCCAGTTT 925
Query 902 TATCGTTCGTTATACTATACTCTAAACTTCCACACAAGGAACTCCGATTTATCATTAGTT 961
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 926 TATCGTTCGTTATACTATACTCTAAACTTCCACACAAGGAACTCCGATTTATCATTAGTT 985
Query 962 CAGTGCCAATGTTCAACTTGTCTGCTGCAGTTGCTGCTAGCAGAATCTACAATAATAGGA 1021
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 986 CAGTGCCAATGTTCAACTTGTCTGCTGCAGTTGCTGCTAGCAGAATCTACAATAATAGGA 1045
Query 1022 AGAAAAAGATTTGGAAACTGGTGAATATGGTTATGCTAGCGTTTTTTGCAATCAGTGCAG 1081
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1046 AGAAAACGATTTGGAAACTGGTGAATATGGTTATGCTAGCGTTTTTTGCAATCAGTGCAG 1105
Query 1082 GGTGCACGCTTGTAACATTCATGGCATCTTACTACAATTATCCTAGCGGCTATGCTTTGA 1141
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1106 GGTGCACGGTTGTAACATTCATGGCATCTTACTACAATTATCCTAGCGGCTATGCTTTAA 1165
Query 1142 ATCGCTTGCATCAGATAGGCCATCCTGCAAATGTAGCTGGAGGA-GAGTGGGTTCACATA 1200
| |||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 1166 AGCGCTTGCATCAGATTGGCCATCCTGCAAATGTAGCTGG-GGAAGAGTGGGTTCACATA 1224
Query 1201 GACACTTTTGGTGCGATGAATGGAATATCTCGCTTTTGTGAAGATGCTTTTCCGTGGAGA 1260
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1225 GACACTTTTGGTGCGATGAATGGAATATCTCGCTTTTGTGAAGATGATTTTCCGTGGAGA 1284
Query 1261 TACTCAAAAGAAGAAGAGATAGTAGTGGAGGAGTTGCGAAACCGAAATTTCACGTACCTG 1320
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1285 TATTCCAAAGAAGAAGAGATAGTAGTGGAGGAGTTGCGAAACCGAAATTTCACGTACCTG 1344
Query 1321 GTGAACGAGCGCCCCTCTGTAGATGGATACAAGTGCTTGTTCTATGAAGAAGGCTTTGAG 1380
|||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1345 GTGAACGAGCATTCCTCTGTAGATGGATACAAGTGCTTATTTTATGAAGAAGGCTTTGAG 1404
Query 1381 AGACTTGAGCTGCGGCGAGGCTTCCCTCCCATTGTCCTGGTAAAAAAGGCCAAGGTATAC 1440
|||||||||||||||||||| ||||||||||||||| |||||||||| ||||| ||||||
Sbjct 1405 AGACTTGAGCTGCGGCGAGGTTTCCCTCCCATTGTCTTGGTAAAAAAAGCCAAAGTATAC 1464
Query 1441 GTGCACCGGGATATGAAGAAGGAAGATCCTTTTCATAAGAAATGGCCTGGATGTTAGGCA 1500
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1465 TTGCACCGGGAGATGAAGAAGGAAGATCCTTTTCATAAGAAATGGCCTGGATGTTAGGTA 1524
Query 1501 ATCCAACAAATAGAGAC 1517
|||| ||||||||||||
Sbjct 1525 ATCCTACAAATAGAGAC 1541
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74849012595
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5