BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg918728

Length=495
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G02140.1 | Symbols: MEE63, MAGO, HAP1 | mago nashi family pr...   824    0.0  


> AT1G02140.1 | Symbols: MEE63, MAGO, HAP1 | mago nashi family 
protein | chr1:403190-404456 REVERSE LENGTH=785
Length=785

 Score =  824 bits (446),  Expect = 0.0
 Identities = 481/497 (97%), Gaps = 5/497 (1%)
 Strand=Plus/Plus

Query  2    AGaaa-aaaaGAGAGAGAAGTCATGGCCGCGGAAGAAGCGACGGAGTTCTACCTGAGGTA  60
            ||||| |||| | ||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct  35   AGAAAGAAAA-AAAGAGAAGGCATGGCCGCGGAAGAAGCGACGGAGTTCTACCTGAGATA  93

Query  61   CTATGTCGGTCACAAAGGGAAATTTGGACACGAGTTCCTGGAGTTCGAGTTTAGAGAGGA  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  94   CTATGTCGGTCACAAAGGGAAATTTGGACACGAGTTCCTGGAGTTCGAGTTTAGAGAGGA  153

Query  121  CGGTAAGCTCCGTTACGCCAACAACTCTAACTACAAGAACGATACTATTATCCGGAAGGA  180
            ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct  154  CGGTAAGCTCCGTTACGCCAATAACTCTAACTACAAGAACGATACTATTATCCGCAAGGA  213

Query  181  GGTGTTTCTCACCCCCGCCGTTCTCAAGGAATGCAAGCGTATCGTCTCCGAGAGCGAGAT  240
            ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  214  GGTATTTCTCACCCCCGCCGTGCTCAAGGAATGCAAGCGTATCGTCTCCGAGAGCGAGAT  273

Query  241  TCTGAAAGAAGACGATAACAATTGGCCGGAACCTGACCGTGTTGGAAAGCAAGAGCTTGA  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  274  TCTGAAAGAAGACGATAACAATTGGCCGGAACCTGACCGTGTTGGAAAGCAAGAGCTCGA  333

Query  301  GATCGTCTTGGGTAATGAGCATATCTCATTCGCTACATCTAAAATTGGATCTCTTGTTGA  360
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  334  GATCGTCTTGGGTAATGAGCATATCTCATTCGCTACATCTAAGATTGGATCTCTTGTTGA  393

Query  361  -TGTCCAGAGCAGTAATGATCCTGAAGGGCTTCGCATCTTCTACTATCTTGTTCAGGACT  419
             || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  394  TTG-CCAGAGCAGTAATGATCCTGAAGGACTTCGCATCTTCTACTATCTTGTTCAGGACT  452

Query  420  TGAAATGTCTTGTTTTTTCGCTCATCTCTCTGCACTTCAAAATCAAGCCTATCTAGAGAA  479
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  453  TGAAATGTCTTGTTTTTTCGCTCATCTCTCTGCACTTCAAAATCAAGCCTATCTAGAGAA  512

Query  480  GAAA-TCAGTGTGTGAC  495
            |||| ||||| ||||||
Sbjct  513  GAAAATCAGTTTGTGAC  529



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23610049090


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5