BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918732
Length=657
Score E
Sequences producing significant alignments: (Bits) Value
AT1G02130.1 | Symbols: ATRAB1B, ARA5, ARA-5, ATRABD2A, RABD2A, ... 1103 0.0
> AT1G02130.1 | Symbols: ATRAB1B, ARA5, ARA-5, ATRABD2A, RABD2A,
RA-5 | RAS 5 | chr1:400035-401882 REVERSE LENGTH=1021
Length=1021
Score = 1103 bits (597), Expect = 0.0
Identities = 638/658 (97%), Gaps = 1/658 (0%)
Strand=Plus/Plus
Query 1 GCTCTTCCTCCCACAGATCG-AAACCATGAATCCTGAGTACGACTATCTTTTCAAGCTCC 59
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 69 GCTCTTCCTCCCACAGATCGAAAACCATGAATCCTGAGTACGACTATCTTTTCAAGCTCC 128
Query 60 TGCTTATCGGGGATTCTGGCGTAGGCAAGTCTTGTCTTCTTTTGAGATTTTCTGATGATT 119
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 129 TGCTTATCGGGGATTCTGGCGTAGGCAAGTCTTGTCTTCTTTTGAGATTCTCTGATGATT 188
Query 120 CTTATGTAGAAAGTTACATTAGCACTATTGGAGTCGATTTTAAAATTAGGACTGTGGAGC 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 189 CTTATGTAGAAAGTTACATTAGCACTATTGGAGTCGATTTTAAAATTAGGACTGTGGAAC 248
Query 180 AAGATGGGAAAACGATTAAGCTCCAAATTTGGGACACTGCTGGTCAAGAACGGTTCAGGA 239
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 249 AAGATGGCAAAACAATTAAGCTCCAAATTTGGGACACTGCTGGTCAAGAACGGTTCAGGA 308
Query 240 CTATTACTAGCAGTTACTACCGTGGGGCACATGGAATTATTATTGTCTACGATGTCACAG 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 309 CTATTACTAGCAGTTACTACCGTGGGGCACATGGAATTATTATTGTCTACGATGTCACAG 368
Query 300 ATCAAGAAAGCTTCAATAATGTGAAGCAATGGTTGAGTGAAATTGATCGTTATGCTAGTG 359
|| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 369 ATGAAGAAAGCTTCAATAATGTCAAGCAATGGTTGAGTGAAATTGATCGTTATGCTAGTG 428
Query 360 ACAACGTGAACAAACTCCTGGTTGGAAACAAGTCTGATCTTACTCAAAACAGAGCCGTTC 419
|||| || ||||||||||| |||||||||||||||||||||||| ||||||||||| |||
Sbjct 429 ACAATGTCAACAAACTCCTTGTTGGAAACAAGTCTGATCTTACTGAAAACAGAGCCATTC 488
Query 420 CTTATGAAACGGCCAAGGCTTTTGCCGATGAAATTGGGATTCCTTTTATGGAGACTAGTG 479
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 489 CTTATGAAACTGCCAAGGCTTTTGCCGATGAAATCGGGATTCCTTTTATGGAGACTAGTG 548
Query 480 CAAAAGATGCTACAAACGTAGAACAGGCTTTCATGGCAATGTCTGCATCCATCAAAGAGA 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 549 CAAAAGATGCTACAAACGTAGAACAGGCTTTCATGGCAATGTCTGCATCCATCAAAGAGA 608
Query 540 GAATGGCAAGCCAACCAGCTGGGAATAATGCAAGACCGCCGACAGTGCAGATCAGAGGAC 599
||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 609 GAATGGCTAGCCAACCAGCTGGGAATAATGCAAGACCACCGACCGTGCAGATCAGAGGAC 668
Query 600 AGCCTATGGCACAGAAGAACGGCTGCTGCTCAACTTGATTGAATTGACCAGCCTAGCA 657
||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 669 AGCCTGTGGCACAGAAGAACGGCTGCTGCTCAACTTGATTGACGTGACCAGCCTAGCA 726
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31747980904
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5