BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918735
Length=1046
Score E
Sequences producing significant alignments: (Bits) Value
AT1G02100.3 | Symbols: | Leucine carboxyl methyltransferase | ... 1655 0.0
> AT1G02100.3 | Symbols: | Leucine carboxyl methyltransferase
| chr1:389823-392811 FORWARD LENGTH=1335
Length=1335
Score = 1655 bits (896), Expect = 0.0
Identities = 990/1034 (96%), Gaps = 12/1034 (1%)
Strand=Plus/Plus
Query 15 GACGACGATGGCAGAATCTCGCAGCAACAGAGCGGCGGTTCAGGCTACTAACGACGATGC 74
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 47 GACGACGATGGCGGAATCTCGCAGCAACAGAGCGGCGGTTCAGGCTACTAACGACGATGC 106
Query 75 ATCCGCCAGTAAATTGTCTTGTGTCAAAAAGGGATATATGAAAGACGACTATGTTCATCT 134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 107 ATCCGCCAGTAAATTGTCTTGTGTCAAAAAGGGATATATGAAAGACGACTATGTTCATCT 166
Query 135 CTTTGTGAAAAGACCTGTTCGACGATCTCCCATCATTAATCGAGGTTACTTTTCCCGTTG 194
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 167 CTTTGTGAAAAGACCTGTTCGAAGATCTCCCATCATTAATCGAGGTTACTTTTCCCGTTG 226
Query 195 GGCTGCCTTCCGAAAGCTTATGTCTCAGTTTC-TCGAATGCGGTACTAATAATGCCAAGA 253
|||||||||||||||||||||||||||||||| || || |||| || | | | | ||||
Sbjct 227 GGCTGCCTTCCGAAAGCTTATGTCTCAGTTTCTTCTAA-GCGGGAC--A-AGTTCTAAGA 282
Query 254 CACAGATACTCTCACTCGGAGCTGGCTTTGATACTACGTATTTTCAGTTGCTGGATGAGG 313
||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 283 AACAGATACTGTCTCTCGGAGCTGGCTTTGATACTACCTATTTTCAGTTGCTGGATGAGG 342
Query 314 GGAAAGGGCCCAATCTCTATGTGGAACTTGATTTTAAGGAGGTCACAAGCAAGAAGGCTG 373
|||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 343 GGAATGGGCCCAATCTCTATGTGGAACTTGATTTTAAGGAGGTGACTAGCAAGAAGGCTG 402
Query 374 CTGTTATAGAAAACTCCTCCCAACTCAGGGACAAACTAGGACCCAATGCATCTATTTCAA 433
|||||||| |||||||| |||||||||||||||||||||| |||||||||||||||| |
Sbjct 403 CTGTTATACAAAACTCCAGCCAACTCAGGGACAAACTAGGAGCCAATGCATCTATTTCTA 462
Query 434 TTGA-GAAAGGACAAGTGCTCAGTGATCATTACAAGTTACTTCCAGTTGACCTGCGCCAT 492
|||| | |||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 463 TTGACG-AAGGACAAGTTCTCAGTGATCATTACAAGTTACTTCCAGTTGACCTGCGCGAT 521
Query 493 ATACCAAAATTAAGAGATGTTATATCCTTTGCAGATATGGATCCAAGTCTGCCGACATTT 552
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 522 ATACCAAAATTAAGAGATGTTATATCCTTTGCAGATATGGATCTAAGTCTGCCGACGTTT 581
Query 553 ATTATTGCAGAATGTGTTTTGATATATCTGGACCCCGATTCAAGCCGTGCCATCGTCAAT 612
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 582 ATTATTGCAGAATGTGTTTTGATTTATCTGGACCCCGATTCAAGCCGTGCCATCGTCAAT 641
Query 613 TGGGCGTCAAAAACGTTTTCAACTGCAGTATTTTTCTTATATGAGCAGATCCATCCAGAT 672
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 642 TGGTCGTCAAAAACGTTTTCAACTGCAGTATTTTTCTTATATGAGCAGATCCATCCAGAT 701
Query 673 GATGCATTTGGACATCAAATGATTAGAAATTTGGAGAGTCGGGGATGTGCACTCTTAAGC 732
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 702 GATGCATTTGGGCATCAAATGATTAGAAATTTGGAGAGTCGGGGATGTGCACTCTTAAGC 761
Query 733 ATTGATGCATCACCAACTTTACTTGCAAAGGAGAGATTGTTTCTTGATAATGGATGGCAG 792
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 762 ATTGATGCATCACCAACTTTACTTGCAAAGGAGAGATTGTTTCTTGATAATGGATGGCAG 821
Query 793 AGAGCTGTTGCCTGGGACATGCTAAAAGTGTATGGTAGTTTTGTTGATACTCAAGAAAAA 852
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 822 AGAGCTGTTGCCTGGGACATGCTAAAAGTGTATGGTAGTTTTGTTGATACTCAAGAAAAA 881
Query 853 CGCAGGATCGAGCGATTGGAGTTGTTTGACGAATTTGAAGAGTGGCACATGATGCAGGAA 912
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 882 CGCAGGATCGAGCGATTGGAGTTGTTTGACGAATTTGAAGAGTGGCACATGATGCAGGAA 941
Query 913 CATTACTGTGTCACATATGCTGTCAATGACGCAATGGGAATATTTGGAGATTTTGGTTTC 972
||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||
Sbjct 942 CATTACTGTGTCACATATGCTGTCAATGATGCAATGGGAATATTTGGTGATTTCGGTTTC 1001
Query 973 ACAAAAGAAGGGGGCGGTGAAAGAATGAGTAGCTCATCAGCATCATCACCTTGaaaaaaa 1032
|||| |||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 1002 ACAAGAGAAGGGGGCGGTGAAAGAATGAG---CTCATCAGCGTCATCACCTTGAAAAG-- 1056
Query 1033 GAGGAGGGTTTGTA 1046
||||||||||||||
Sbjct 1057 GAGGAGGGTTTGTA 1070
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51289064087
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5