BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg918741

Length=293
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G02074.1 | Symbols:  | unknown protein; Has 30201 Blast hits...   119    2e-26


> AT1G02074.1 | Symbols:  | unknown protein; Has 30201 Blast hits 
to 17322 proteins in 780 species: Archae - 12; Bacteria - 
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses 
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:372064-372210 
FORWARD LENGTH=147
Length=147

 Score =  119 bits (64),  Expect = 2e-26
 Identities = 119/144 (83%), Gaps = 9/144 (6%)
 Strand=Plus/Plus

Query  21   ATGAAGG-AATCCGA-GGGAGACAAAATCAACGACGAAAAT-CAGTTCCCTGGTGGTTTC  77
            ||| ||| |||| || |||| |||||| | ||| || |  |  ||||||| |||||||||
Sbjct  6    ATGGAGGCAATCGGAGGGGAAACAAAACCGACGGCG-ATGTGAAGTTCCC-GGTGGTTTC  63

Query  78   -CTTGGCTTGAAATATAAACGGTCGGAG-GGTGATCCACGTGGCAGATTTCAGGCGATAT  135
             | |  |||| ||  ||||||||||||| || ||||||||||||||| |||||| |||||
Sbjct  64   GC-TAACTTGGAACCTAAACGGTCGGAGAGG-GATCCACGTGGCAGAATTCAGGAGATAT  121

Query  136  TTTTGGAGTTTGGTTGGCCATGTT  159
            ||||||||||||||||||||||||
Sbjct  122  TTTTGGAGTTTGGTTGGCCATGTT  145



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13522024481


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5