BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918756
Length=1347
Score E
Sequences producing significant alignments: (Bits) Value
AT1G02000.1 | Symbols: GAE2 | UDP-D-glucuronate 4-epimerase 2 |... 2045 0.0
> AT1G02000.1 | Symbols: GAE2 | UDP-D-glucuronate 4-epimerase 2
| chr1:345812-347592 FORWARD LENGTH=1781
Length=1781
Score = 2045 bits (1107), Expect = 0.0
Identities = 1261/1334 (95%), Gaps = 16/1334 (1%)
Strand=Plus/Plus
Query 1 CTGGAAGATCAAATCTTTGAATGTCGCATCTCGACGACGACATTCCTTCTACTCCTGGGA 60
|||| | |||||||||||| ||||||||||| | ||||||||||||||||| |||||||
Sbjct 223 CTGGGA-ATCAAATCTTTG-ATGTCGCATCT-G--GACGACATTCCTTCTACGCCTGGGA 277
Query 61 AATTC-A-A-GATGGATAAATCCCCCTACTTCCTCCACCGTACTCGGTGGCAATCCTCCG 117
||||| | | ||||||||||||||||| |||||| ||||||||||| |||||||||||||
Sbjct 278 AATTCAAGATGATGGATAAATCCCCCTTCTTCCTGCACCGTACTCGTTGGCAATCCTCCG 337
Query 118 TCGCCAAGCTTGCTTTTTGGTCCCTTGTCTTTTTCGGATTGCTCTTCATCTTCTTCTACC 177
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 338 TCGCCAAGCTTGCCTTTTGGTCCCTTGTCTTTTTCGGATTGCTCTTCATCTTCTTCTACC 397
Query 178 GATCTCCCATCTCCAATCCCGATTCTTCTCGCCGCTCTCTTCGCACCTACTCTTGGGGCG 237
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 398 GATCTCCCATCTCCAATCCCGATTCCTCTCGCCGCTCTCTTCGCACCTACTCTTGGGGCG 457
Query 238 GTCCC-CACTGGGAGAAACGCGTCAGATCCTCCGCTCGTGTCCGCACCCGCAACGGCGTC 296
||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 458 GTCCCGC-CTGGGAGAAACGCGTCCGATCCTCCGCTCGTGTCCGCACCCGCAACGGCGTC 516
Query 297 TCCGTTCTCGTCACCGGAGCCGCCGGCTTCGTCGGAACGCACGTCTCAGCCGCTCTTAAA 356
||||||||||||||||| |||||||| |||||||| || |||||||| ||||||||||||
Sbjct 517 TCCGTTCTCGTCACCGGGGCCGCCGGTTTCGTCGGGACTCACGTCTCTGCCGCTCTTAAA 576
Query 357 CGACGCGGCGACGGCGTTCTAGGGCTCGACAACTTCAACGATTACTACGACACGTCTCTC 416
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 577 CGACGCGGCGACGGCGTTCTAGGCCTCGACAACTTCAACGATTACTACGACACCTCTCTC 636
Query 417 AAGAGATCTCGGCAAGCCCTCCTCGAGCGAAGCGGAGTGTTCATCGTGGAAGGAGACATC 476
||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 637 AAGAGATCTCGACAAGCCCTCCTCGAGAGAAGCGGAGTGTTCATCGTTGAAGGAGACATC 696
Query 477 AACGATTTGTCTCTCCTGAAGAAGCTCTTCGAGGTCGTGCCC-TTCACTCACGTCATGCA 535
|||||| |||||||||| |||||||||||||||||||| ||| |||||||||||||||||
Sbjct 697 AACGATCTGTCTCTCCTCAAGAAGCTCTTCGAGGTCGT-CCCTTTCACTCACGTCATGCA 755
Query 536 TCTGGCCGCTCAAGCTGGTGTCAGATACGCCATGGAGAATCCCAGCTCCTACGTTCACAG 595
||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 756 TCTTGCCGCTCAAGCTGGTGTCAGATACGCCATGGAGAACCCCGGCTCCTACGTTCACAG 815
Query 596 CAACATCGCTGGCTTCGTTAACCTCCTCGAAGTCTGTAAATCCGCTAATCCTCAGCCGGC 655
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 816 CAACATCGCTGGTTTCGTTAACCTCCTCGAGGTCTGTAAATCCGCTAATCCTCAGCCGGC 875
Query 656 GATCGTGTGGGCATCGTCAAGTTCGGTCTACGGATTAAACACCAAAGTCCCGTTCTCTGA 715
|||||||||||||||||| || || |||||||| ||||||||||||||||| ||||||||
Sbjct 876 GATCGTGTGGGCATCGTCTAGCTCCGTCTACGGTTTAAACACCAAAGTCCCCTTCTCTGA 935
Query 716 GAAAGACAGAACAGACCAGCCTGCGAGTCTCTACGCTGCGACCAAGAAAGCTGGAGAAGA 775
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 936 GAAAGACAGAACAGATCAGCCTGCGAGTCTCTACGCTGCGACCAAGAAAGCTGGAGAAGA 995
Query 776 GATTGCCCACACTTACAATCACATCTACGGGCTCTCTCTTACCGGGTTGAGGTTTTTCAC 835
|||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||
Sbjct 996 GATTGCCCACACTTACAACCACATCTACGGGCTCTCTCTCACCGGCTTGAGGTTTTTCAC 1055
Query 836 GGTGTACGGGCCGTGGGGGAGACCTGACATGGCTTACTTCTTCTTCACCAGAGATATCCT 895
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1056 GGTGTACGGGCCGTGGGGAAGACCTGACATGGCTTACTTCTTCTTCACCAGAGACATCCT 1115
Query 896 CAAAGGGAAAGCGATTTCAATCTTCCAAGGAGCCAACCACGGAACAGTGGCTAGGGATTT 955
|||||||||||| ||||| |||||| |||||||||| |||||||||||||||||||||||
Sbjct 1116 CAAAGGGAAAGCTATTTCGATCTTCGAAGGAGCCAATCACGGAACAGTGGCTAGGGATTT 1175
Query 956 CACATACATCGATGACATAGTGAAAGGATGTTTGGGGGCTCTGGACACGGCGGAGAAGAG 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1176 CACATACATCGATGACATAGTGAAAGGATGTTTGGGGGCTCTGGACACGGCGGAGAAGAG 1235
Query 1016 CACAGGGAGTGGCGGTAAGAAGCGGGGTGCGGCTCAGCTGAGGGTCTTCAACCTGGGGAA 1075
|||||||||||| || ||||||||||| ||||||||||| ||||| ||||||||||||||
Sbjct 1236 CACAGGGAGTGGTGGCAAGAAGCGGGGAGCGGCTCAGCTAAGGGTATTCAACCTGGGGAA 1295
Query 1076 CACATCTCCGGTACCGGTAACGGATCTAGTGAGTATATTGGAGAGATTGTTGAAAGTGAA 1135
|||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1296 CACATCTCCGGTGCCGGTGACGGATCTTGTGAGTATATTGGAGAGATTGTTGAAAGTGAA 1355
Query 1136 AGCGAAGAGGAACATGATGAAGCTGCCGAGGAATGGTGATGTGGCCTTCACACATGCTAA 1195
||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1356 AGCCAAGAGGAACATGATGAAGCTGCCGAGGAATGGTGATGTGCCCTTCACACATGCTAA 1415
Query 1196 TATCAGTTGGGCAGAGAGAGAGTTTGGGTACAAACCAAGCACGGATTTGCAGACTGGTCT 1255
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1416 TATCAGTTCGGCACAGAGAGAGTTTGGGTACAAACCAAGCACGGATTTGCAGACTGGTCT 1475
Query 1256 AAACAAGTTTGTAAGATGGTATCTTGGTTACTACAAGCAGCAGGGGGGAAAGAAAGTCGC 1315
||| |||||||| ||||||||||||||||||||||||||| ||||| ||||||||| ||
Sbjct 1476 AAAGAAGTTTGTGAGATGGTATCTTGGTTACTACAAGCAG--GGGGG-AAAGAAAGTTGC 1532
Query 1316 TGCCGCTTGATTGA 1329
||| ||| | ||||
Sbjct 1533 TGCTGCT-GCTTGA 1545
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66314919945
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5