BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg918756 Length=1347 Score E Sequences producing significant alignments: (Bits) Value AT1G02000.1 | Symbols: GAE2 | UDP-D-glucuronate 4-epimerase 2 |... 2045 0.0 > AT1G02000.1 | Symbols: GAE2 | UDP-D-glucuronate 4-epimerase 2 | chr1:345812-347592 FORWARD LENGTH=1781 Length=1781 Score = 2045 bits (1107), Expect = 0.0 Identities = 1261/1334 (95%), Gaps = 16/1334 (1%) Strand=Plus/Plus Query 1 CTGGAAGATCAAATCTTTGAATGTCGCATCTCGACGACGACATTCCTTCTACTCCTGGGA 60 |||| | |||||||||||| ||||||||||| | ||||||||||||||||| ||||||| Sbjct 223 CTGGGA-ATCAAATCTTTG-ATGTCGCATCT-G--GACGACATTCCTTCTACGCCTGGGA 277 Query 61 AATTC-A-A-GATGGATAAATCCCCCTACTTCCTCCACCGTACTCGGTGGCAATCCTCCG 117 ||||| | | ||||||||||||||||| |||||| ||||||||||| ||||||||||||| Sbjct 278 AATTCAAGATGATGGATAAATCCCCCTTCTTCCTGCACCGTACTCGTTGGCAATCCTCCG 337 Query 118 TCGCCAAGCTTGCTTTTTGGTCCCTTGTCTTTTTCGGATTGCTCTTCATCTTCTTCTACC 177 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 338 TCGCCAAGCTTGCCTTTTGGTCCCTTGTCTTTTTCGGATTGCTCTTCATCTTCTTCTACC 397 Query 178 GATCTCCCATCTCCAATCCCGATTCTTCTCGCCGCTCTCTTCGCACCTACTCTTGGGGCG 237 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 398 GATCTCCCATCTCCAATCCCGATTCCTCTCGCCGCTCTCTTCGCACCTACTCTTGGGGCG 457 Query 238 GTCCC-CACTGGGAGAAACGCGTCAGATCCTCCGCTCGTGTCCGCACCCGCAACGGCGTC 296 ||||| | |||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 458 GTCCCGC-CTGGGAGAAACGCGTCCGATCCTCCGCTCGTGTCCGCACCCGCAACGGCGTC 516 Query 297 TCCGTTCTCGTCACCGGAGCCGCCGGCTTCGTCGGAACGCACGTCTCAGCCGCTCTTAAA 356 ||||||||||||||||| |||||||| |||||||| || |||||||| |||||||||||| Sbjct 517 TCCGTTCTCGTCACCGGGGCCGCCGGTTTCGTCGGGACTCACGTCTCTGCCGCTCTTAAA 576 Query 357 CGACGCGGCGACGGCGTTCTAGGGCTCGACAACTTCAACGATTACTACGACACGTCTCTC 416 ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 577 CGACGCGGCGACGGCGTTCTAGGCCTCGACAACTTCAACGATTACTACGACACCTCTCTC 636 Query 417 AAGAGATCTCGGCAAGCCCTCCTCGAGCGAAGCGGAGTGTTCATCGTGGAAGGAGACATC 476 ||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||| Sbjct 637 AAGAGATCTCGACAAGCCCTCCTCGAGAGAAGCGGAGTGTTCATCGTTGAAGGAGACATC 696 Query 477 AACGATTTGTCTCTCCTGAAGAAGCTCTTCGAGGTCGTGCCC-TTCACTCACGTCATGCA 535 |||||| |||||||||| |||||||||||||||||||| ||| ||||||||||||||||| Sbjct 697 AACGATCTGTCTCTCCTCAAGAAGCTCTTCGAGGTCGT-CCCTTTCACTCACGTCATGCA 755 Query 536 TCTGGCCGCTCAAGCTGGTGTCAGATACGCCATGGAGAATCCCAGCTCCTACGTTCACAG 595 ||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| Sbjct 756 TCTTGCCGCTCAAGCTGGTGTCAGATACGCCATGGAGAACCCCGGCTCCTACGTTCACAG 815 Query 596 CAACATCGCTGGCTTCGTTAACCTCCTCGAAGTCTGTAAATCCGCTAATCCTCAGCCGGC 655 |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 816 CAACATCGCTGGTTTCGTTAACCTCCTCGAGGTCTGTAAATCCGCTAATCCTCAGCCGGC 875 Query 656 GATCGTGTGGGCATCGTCAAGTTCGGTCTACGGATTAAACACCAAAGTCCCGTTCTCTGA 715 |||||||||||||||||| || || |||||||| ||||||||||||||||| |||||||| Sbjct 876 GATCGTGTGGGCATCGTCTAGCTCCGTCTACGGTTTAAACACCAAAGTCCCCTTCTCTGA 935 Query 716 GAAAGACAGAACAGACCAGCCTGCGAGTCTCTACGCTGCGACCAAGAAAGCTGGAGAAGA 775 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 936 GAAAGACAGAACAGATCAGCCTGCGAGTCTCTACGCTGCGACCAAGAAAGCTGGAGAAGA 995 Query 776 GATTGCCCACACTTACAATCACATCTACGGGCTCTCTCTTACCGGGTTGAGGTTTTTCAC 835 |||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||| Sbjct 996 GATTGCCCACACTTACAACCACATCTACGGGCTCTCTCTCACCGGCTTGAGGTTTTTCAC 1055 Query 836 GGTGTACGGGCCGTGGGGGAGACCTGACATGGCTTACTTCTTCTTCACCAGAGATATCCT 895 |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct 1056 GGTGTACGGGCCGTGGGGAAGACCTGACATGGCTTACTTCTTCTTCACCAGAGACATCCT 1115 Query 896 CAAAGGGAAAGCGATTTCAATCTTCCAAGGAGCCAACCACGGAACAGTGGCTAGGGATTT 955 |||||||||||| ||||| |||||| |||||||||| ||||||||||||||||||||||| Sbjct 1116 CAAAGGGAAAGCTATTTCGATCTTCGAAGGAGCCAATCACGGAACAGTGGCTAGGGATTT 1175 Query 956 CACATACATCGATGACATAGTGAAAGGATGTTTGGGGGCTCTGGACACGGCGGAGAAGAG 1015 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1176 CACATACATCGATGACATAGTGAAAGGATGTTTGGGGGCTCTGGACACGGCGGAGAAGAG 1235 Query 1016 CACAGGGAGTGGCGGTAAGAAGCGGGGTGCGGCTCAGCTGAGGGTCTTCAACCTGGGGAA 1075 |||||||||||| || ||||||||||| ||||||||||| ||||| |||||||||||||| Sbjct 1236 CACAGGGAGTGGTGGCAAGAAGCGGGGAGCGGCTCAGCTAAGGGTATTCAACCTGGGGAA 1295 Query 1076 CACATCTCCGGTACCGGTAACGGATCTAGTGAGTATATTGGAGAGATTGTTGAAAGTGAA 1135 |||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||| Sbjct 1296 CACATCTCCGGTGCCGGTGACGGATCTTGTGAGTATATTGGAGAGATTGTTGAAAGTGAA 1355 Query 1136 AGCGAAGAGGAACATGATGAAGCTGCCGAGGAATGGTGATGTGGCCTTCACACATGCTAA 1195 ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1356 AGCCAAGAGGAACATGATGAAGCTGCCGAGGAATGGTGATGTGCCCTTCACACATGCTAA 1415 Query 1196 TATCAGTTGGGCAGAGAGAGAGTTTGGGTACAAACCAAGCACGGATTTGCAGACTGGTCT 1255 |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1416 TATCAGTTCGGCACAGAGAGAGTTTGGGTACAAACCAAGCACGGATTTGCAGACTGGTCT 1475 Query 1256 AAACAAGTTTGTAAGATGGTATCTTGGTTACTACAAGCAGCAGGGGGGAAAGAAAGTCGC 1315 ||| |||||||| ||||||||||||||||||||||||||| ||||| ||||||||| || Sbjct 1476 AAAGAAGTTTGTGAGATGGTATCTTGGTTACTACAAGCAG--GGGGG-AAAGAAAGTTGC 1532 Query 1316 TGCCGCTTGATTGA 1329 ||| ||| | |||| Sbjct 1533 TGCTGCT-GCTTGA 1545 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 66314919945 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5