BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg918770

Length=470
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G01840.1 | Symbols:  | unknown protein; Has 23 Blast hits to...   584    2e-166


> AT1G01840.1 | Symbols:  | unknown protein; Has 23 Blast hits 
to 23 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr1:303537-304358 FORWARD LENGTH=822
Length=822

 Score =  584 bits (316),  Expect = 2e-166
 Identities = 443/498 (89%), Gaps = 34/498 (7%)
 Strand=Plus/Plus

Query  2    AGAGAGAGTGTGTAAGAACATGGCAAGTGTAGAGCAAGTAGCTGAGCTGATATCATCGCT  61
            |||| | ||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct  95   AGAGTGTGTGTGTAAGAATATGGCAAGTATAGAGCAAGTAGCTGAGCTGATATCATCGCT  154

Query  62   GGAGCAAGCAACTTTAATGGCGCAGCAAATGGGAACCACCGT-GGACCAGAACCAGTTAC  120
            ||||||||||||||||||||| |||||||| ||||||||||| |||| ||||||||||||
Sbjct  155  GGAGCAAGCAACTTTAATGGCACAGCAAATCGGAACCACCGTTGGAC-AGAACCAGTTAC  213

Query  121  TCCAAATCTCCTCTCTCCGCATAGCCCACCAACGCCTATCTGCCTTCCTGGCCTCCATCC  180
            ||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||| |
Sbjct  214  TCCAAATTTCCTCTCTCCGCATAGCCCACCAACGCCTCTCTGCCTTCCTAGCCTCCATAC  273

Query  181  CATCGGCGGAAGGGGAGAAATCTTTCTCCTCCGTCGAGCCGATGCAATTaggagaagaag  240
            || |||||||||  |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  274  CAACGGCGGAAGCTGAGAAATCTTTCTCCTCCGTGGAGCCGATGCAATTAGGAGAAGAAG  333

Query  241  agaa-gg-gag----ag---gctgaagaggagagatactcggcgatggagaaggtggagg  291
            |||| || |||    ||   |||||||||||||||||||||||||| |||||||||||||
Sbjct  334  AGAAAGGAGAGGCTGAGCCTGCTGAAGAGGAGAGATACTCGGCGATAGAGAAGGTGGAGG  393

Query  292  agaagatgagagaCTGCTTCATTAGAAACAAGAGACTCAAGCGGCCACTGTCTCC---GT  348
            ||||||||||||| || ||||||||||||||||||||||||||||||||||||||   ||
Sbjct  394  AGAAGATGAGAGAGTGTTTCATTAGAAACAAGAGACTCAAGCGGCCACTGTCTCCCTCGT  453

Query  349  CG--T----------C---G---ACGGAAGAGAGGAGTGGCCGTGATTATGGGTTTGATT  390
            ||  |          |   |   |||||||||||||||||||||||||||||||||||||
Sbjct  454  CGGCTGTGGTGGAGACTTCGGCGACGGAAGAGAGGAGTGGCCGTGATTATGGGTTTGATT  513

Query  391  CCGACCCACATGCCACCAAGTTGAGAGCTTTGGATCTTATCTACCAGTTTCATGGATGAT  450
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||
Sbjct  514  CCGACCCACATGCCACCAAGTTGAGAGCTTTGGATCTTATCTACCAGTTTCATGCTTGAT  573

Query  451  TGTAACAAATTGT-GATT  467
            | ||  ||||||| ||||
Sbjct  574  TTTAT-AAATTGTAGATT  590



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22354195415


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5