BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg918770 Length=470 Score E Sequences producing significant alignments: (Bits) Value AT1G01840.1 | Symbols: | unknown protein; Has 23 Blast hits to... 584 2e-166 > AT1G01840.1 | Symbols: | unknown protein; Has 23 Blast hits to 23 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:303537-304358 FORWARD LENGTH=822 Length=822 Score = 584 bits (316), Expect = 2e-166 Identities = 443/498 (89%), Gaps = 34/498 (7%) Strand=Plus/Plus Query 2 AGAGAGAGTGTGTAAGAACATGGCAAGTGTAGAGCAAGTAGCTGAGCTGATATCATCGCT 61 |||| | ||||||||||| ||||||||| ||||||||||||||||||||||||||||||| Sbjct 95 AGAGTGTGTGTGTAAGAATATGGCAAGTATAGAGCAAGTAGCTGAGCTGATATCATCGCT 154 Query 62 GGAGCAAGCAACTTTAATGGCGCAGCAAATGGGAACCACCGT-GGACCAGAACCAGTTAC 120 ||||||||||||||||||||| |||||||| ||||||||||| |||| |||||||||||| Sbjct 155 GGAGCAAGCAACTTTAATGGCACAGCAAATCGGAACCACCGTTGGAC-AGAACCAGTTAC 213 Query 121 TCCAAATCTCCTCTCTCCGCATAGCCCACCAACGCCTATCTGCCTTCCTGGCCTCCATCC 180 ||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||| | Sbjct 214 TCCAAATTTCCTCTCTCCGCATAGCCCACCAACGCCTCTCTGCCTTCCTAGCCTCCATAC 273 Query 181 CATCGGCGGAAGGGGAGAAATCTTTCTCCTCCGTCGAGCCGATGCAATTaggagaagaag 240 || ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 274 CAACGGCGGAAGCTGAGAAATCTTTCTCCTCCGTGGAGCCGATGCAATTAGGAGAAGAAG 333 Query 241 agaa-gg-gag----ag---gctgaagaggagagatactcggcgatggagaaggtggagg 291 |||| || ||| || |||||||||||||||||||||||||| ||||||||||||| Sbjct 334 AGAAAGGAGAGGCTGAGCCTGCTGAAGAGGAGAGATACTCGGCGATAGAGAAGGTGGAGG 393 Query 292 agaagatgagagaCTGCTTCATTAGAAACAAGAGACTCAAGCGGCCACTGTCTCC---GT 348 ||||||||||||| || |||||||||||||||||||||||||||||||||||||| || Sbjct 394 AGAAGATGAGAGAGTGTTTCATTAGAAACAAGAGACTCAAGCGGCCACTGTCTCCCTCGT 453 Query 349 CG--T----------C---G---ACGGAAGAGAGGAGTGGCCGTGATTATGGGTTTGATT 390 || | | | ||||||||||||||||||||||||||||||||||||| Sbjct 454 CGGCTGTGGTGGAGACTTCGGCGACGGAAGAGAGGAGTGGCCGTGATTATGGGTTTGATT 513 Query 391 CCGACCCACATGCCACCAAGTTGAGAGCTTTGGATCTTATCTACCAGTTTCATGGATGAT 450 |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 514 CCGACCCACATGCCACCAAGTTGAGAGCTTTGGATCTTATCTACCAGTTTCATGCTTGAT 573 Query 451 TGTAACAAATTGT-GATT 467 | || ||||||| |||| Sbjct 574 TTTAT-AAATTGTAGATT 590 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22354195415 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5