BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918777
Length=658
Score E
Sequences producing significant alignments: (Bits) Value
AT1G01780.1 | Symbols: PLIM2b | GATA type zinc finger transcrip... 1072 0.0
> AT1G01780.1 | Symbols: PLIM2b | GATA type zinc finger transcription
factor family protein | chr1:282761-284245 FORWARD LENGTH=939
Length=939
Score = 1072 bits (580), Expect = 0.0
Identities = 632/658 (96%), Gaps = 0/658 (0%)
Strand=Plus/Plus
Query 1 AAAAAGACCCAACaaaaaaaaTGTCTTTCACAGGAACTCTCGACAAATGCAACGTTTGTG 60
||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 139 AAAAAGATAAAACAAAAAAAATGTCTTTCACAGGAACTCTCGACAAATGCAATGTTTGTG 198
Query 61 ATAAGACAGTCTATGTGGTGGACATGTTGTCCATTGAAGGAATGCCTTACCACAAGTCTT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 199 ATAAGACAGTCTATGTGGTGGACATGTTGTCCATTGAAGGAATGCCTTACCACAAGTCTT 258
Query 121 GCTTCAGGTGCACCCATTGCAAAGGAACCCTTGTGATGAGCAACTATTCCTCCATGGACG 180
|||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 259 GCTTCAGGTGTACCCATTGCAAAGGAACCCTTCAGATGAGCAACTATTCCTCCATGGACG 318
Query 181 GAGTTTTGTACTGCAAGACGCATTTTGAGCAGCTCTTCAAGGAATCTGGCAATTTCAGCA 240
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 319 GAGTTTTGTACTGCAAGACTCATTTTGAGCAACTCTTCAAGGAATCTGGCAATTTCAGCA 378
Query 241 AAAACTTTCAACCAGGAAAAACTGAGAAGCCGGAGCTGACTAAGACTCCCAGCAAGATAT 300
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 379 AAAACTTTCAACCAGGAAAAACTGAGAAGCCAGAGCTGACTAGGACTCCCAGCAAGATAT 438
Query 301 CTTCCATCTTCTGTGGAACACAAGACAAGTGTGCCGCTTGCGAAAAAACTGTTTACCCTC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 439 CTTCCATCTTCTGTGGAACACAAGACAAGTGTGCCGCTTGCGAAAAAACTGTTTACCCTC 498
Query 361 TTGAAAAGATACAAATGGAAGGAGAATGCTTCCACAAGACATGTTTCCGATGCGCTCACG 420
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 499 TTGAAAAGATACAAATGGAAGGAGAATGCTTCCACAAGACATGTTTCCGGTGCGCTCACG 558
Query 421 GTGGGTGTACGCTCACTCACTCCTCCTACGCCTCCCTGGATAGCGTTCTCTATTGCCGGC 480
||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||| |
Sbjct 559 GTGGGTGTACGCTGACTCACTCCTCCTACGCCTCCTTAGATAGCGTTCTCTATTGCCGAC 618
Query 481 ATCACTTCAACCAACTGTTCCTGGAGAAAGGAAACTACGCTCACGTCCTCCAAGCTGCCA 540
||||||| |||||||| ||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 619 ATCACTTTAACCAACTCTTCATGGAGAAAGGAAACTACGCTCACGTCCTCCAAGCCGCCA 678
Query 541 ACCACCGTCGCACAGCCTCAGGCAACACACTTCCACCGGAACCTACCGAAGACATCGCCG 600
| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 679 ATCACCGTCGCACAGCCTCAGGCAACACTCTTCCACCGGAACCTACCGAAGACGTCGCCG 738
Query 601 TCGAGGCCAAGGAAGAGAATGGCGTTTCACAGTCTTGAATATCTCTTACCTGAGTGTT 658
| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 739 TGGAGGCCAAGGAAGAGAATGGCGTTTCAGAGTCTTGAATATCTCTTACATGAGTGTT 796
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31798215051
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5