BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918780
Length=553
Score E
Sequences producing significant alignments: (Bits) Value
AT1G01750.1 | Symbols: ADF11 | actin depolymerizing factor 11 |... 950 0.0
AT4G00680.1 | Symbols: ADF8 | actin depolymerizing factor 8 | c... 510 5e-144
AT5G52360.1 | Symbols: ADF10 | actin depolymerizing factor 10 |... 257 7e-68
> AT1G01750.1 | Symbols: ADF11 | actin depolymerizing factor 11
| chr1:275366-276310 FORWARD LENGTH=769
Length=769
Score = 950 bits (514), Expect = 0.0
Identities = 540/553 (98%), Gaps = 0/553 (0%)
Strand=Plus/Plus
Query 1 GCCCCAATTTCAAGCAGAGAACAATGGCTAATTCAGCGTCTGGGATGCACGTTAGCGATG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 140 GCCCCAATTTCAAGCAGAGAACAATGGCTAATTCAGCGTCTGGGATGCACGTTAGCGATG 199
Query 61 ACTGCAAGCTCAAGTTCTTGGAGTTGAAAGCAAAGAGGAACTATAGGTTCATTGTGTTCA 120
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 200 AGTGCAAGCTCAAGTTCTTGGAGTTAAAAGCAAAGAGGAACTATAGGTTCATTGTGTTCA 259
Query 121 AAATTGATGAGAAGGCTCAGCAAGTTATGATTGACAAGCTTGGGAATCCAGAAGAAACTT 180
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 260 AAATTGATGAGAAGGCTCAGCAAGTTATGATAGACAAGCTTGGGAATCCAGAAGAAACTT 319
Query 181 ACGACGATTTCACCAGATCTATTCCCGAGGACGAGTGCCGATATGCTGTCTATGACTTTG 240
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 320 ACGAAGATTTCACCAGATCTATTCCCGAGGATGAGTGCCGATATGCTGTCTATGACTATG 379
Query 241 ATTTCACCACTCCTGAGAACTGCCAGAAGAGCAAAATCTTTTTCATCGCATGGTCACCTG 300
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 380 ATTTCACCACCCCTGAGAACTGCCAGAAGAGCAAAATCTTTTTCATCGCATGGTCACCTG 439
Query 301 ATACATCAAGAGTGAGAAGTAAGATGTTGTATGCAAGCTCAAAGGACAGGTTCAAGAGGG 360
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 440 ATACATCAAGAGTGAGGAGTAAGATGTTGTATGCAAGCTCAAAGGACAGGTTCAAGAGGG 499
Query 361 AATTGGATGGGATTCAAGTTGAATTGCAAGCAACAGATCCTAGCGAGATGAGCCTCGACA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 500 AATTGGATGGGATTCAAGTTGAATTGCAAGCAACAGATCCTAGCGAGATGAGCCTCGACA 559
Query 421 TCATCAAGGGACGAGTCAATCTCTGAATGGGACTTACCGCATCTTAATTCGTTTCAGTCA 480
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 560 TCATCAAGGGACGAGTCAATCTCTGAATGGAACTTACCGCATCTTAATTCGTTTCAGTCA 619
Query 481 AAATTCAtattttctgctttcgttttcttgggtatttttcgtttcacttctttgctattt 540
|||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||
Sbjct 620 AAATTCATATTTTCTGCTTTCGTTTTCTTGGGTATTTTTCATTTAACTTCTTTACTATTT 679
Query 541 gtattttctGTGA 553
|||| ||||||||
Sbjct 680 GTATCTTCTGTGA 692
> AT4G00680.1 | Symbols: ADF8 | actin depolymerizing factor 8 |
chr4:279596-280699 REVERSE LENGTH=698
Length=698
Score = 510 bits (276), Expect = 5e-144
Identities = 381/432 (88%), Gaps = 5/432 (1%)
Strand=Plus/Plus
Query 18 AGAACA-ATGGCTAATTCAGCGTCTGGGATGCACGTTAGCGATGACTGCAAGCTCAAGTT 76
|||| | |||||||||||||||||||||||||| || | ||||| |||||| | |||||
Sbjct 85 AGAAAATATGGCTAATTCAGCGTCTGGGATGCATGTGAATGATGAATGCAAGATTAAGTT 144
Query 77 CTTGGAGTTGAAAGCAAAGAGGAAC-TATAGGTTCATTGTGTTCAAAATTGATGAGAAGG 135
||| |||||||||||||||||| || || |||||||||||||||||||||||||||||||
Sbjct 145 CTTAGAGTTGAAAGCAAAGAGG-ACTTACAGGTTCATTGTGTTCAAAATTGATGAGAAGG 203
Query 136 CTCAGCAAGT-TATGATTGACAAGCTTGGGAATCCAGAAGAAACTTACGACGATTTCACC 194
| |||||||| | || || ||||||||||||||||||||||||||||||||||| |||
Sbjct 204 CACAGCAAGTGCA-AATAGAAAAGCTTGGGAATCCAGAAGAAACTTACGACGATTTTACC 262
Query 195 AGATCTATTCCCGAGGACGAGTGCCGATATGCTGTCTATGACTTTGATTTCACCACTCCT 254
|| ||||| ||||| ||||| |||||||| |||||||| || ||||||||||||||
Sbjct 263 AGCTCTATCCCCGATGACGAATGCCGATACGCTGTCTACGATTTTGATTTCACCACAGAG 322
Query 255 GAGAACTGCCAGAAGAGCAAAATCTTTTTCATCGCATGGTCACCTGATACATCAAGAGTG 314
|| || || ||||||||||| |||||||||||||| ||||||||||||||||| |||||
Sbjct 323 GACAATTGTCAGAAGAGCAAGATCTTTTTCATCGCGTGGTCACCTGATACATCGAGAGTT 382
Query 315 AGAAGTAAGATGTTGTATGCAAGCTCAAAGGACAGGTTCAAGAGGGAATTGGATGGGATT 374
| |||||||||||||||||||||||||| |||||||||||||| ||| |||| || |||
Sbjct 383 CGGAGTAAGATGTTGTATGCAAGCTCAAAAGACAGGTTCAAGAGAGAAATGGAAGGAATT 442
Query 375 CAAGTTGAATTGCAAGCAACAGATCCTAGCGAGATGAGCCTCGACATCATCAAGGGACGA 434
|||||||||||||||||||| |||||||| ||||||||||| ||||||||||| ||||||
Sbjct 443 CAAGTTGAATTGCAAGCAACTGATCCTAGTGAGATGAGCCTTGACATCATCAAAGGACGA 502
Query 435 GTCAATCTCTGA 446
|||||||||||
Sbjct 503 CTCAATCTCTGA 514
> AT5G52360.1 | Symbols: ADF10 | actin depolymerizing factor 10
| chr5:21257934-21259342 REVERSE LENGTH=750
Length=750
Score = 257 bits (139), Expect = 7e-68
Identities = 327/415 (79%), Gaps = 24/415 (6%)
Strand=Plus/Plus
Query 22 CAATGGCTAATTCAGCGTCTGGGAT-GCACGT-TAGCGATGACTGCAAGCTCAAGTTCTT 79
||||||| || | ||||| ||||| || || || || || || ||||| ||||| ||
Sbjct 112 CAATGGCGAACGCGGCGTCGGGGATGGC-GGTGGAG-GACGAGTGTAAGCTGAAGTTTTT 169
Query 80 GGAGTTGAAAGCAAAGAGGAACTATAGGTTCATTGTGTTCAAAATTGATGAGAAGGCTCA 139
|||| | ||||| ||||| |||||||||||||| | ||| | ||| ||| || ||
Sbjct 170 GGAGCTAAAAGCGAAGAGAAACTATAGGTTCATAATATTC---A-GGAT-AGATGG-ACA 223
Query 140 GCAAGTTATGATTGACAAGCTTGGGAA-TCCAGAAGA-AACTTACGACGATTTCACCAGA 197
||||| || | || |||| |||||| || |||| ||| |||||||||||||||| |
Sbjct 224 ACAAGTGGTGGTAGAAAAGC-TGGGAAGCCCCCAAGAGAAC-TACGACGATTTCACCA-A 280
Query 198 TCTA--TTCC-CGAGGACGAGTGCCGATATGCTGTCTATGACTTTGATTTCACCACTCCT 254
| || | || | | | || ||||| || || || |||||||| || ||||||||| ||
Sbjct 281 T-TACCTACCGCCA-AATGAATGCCGCTACGCCGTTTATGACTTCGACTTCACCACTGCT 338
Query 255 GAGAACT-GCCAGAAGAGCAAAATCTTTTTCATCGCATGGTCACCTGATACATCAAGAGT 313
||||| | |||||||||||| ||||| ||||| ||||||||||| ||| |||| |||||
Sbjct 339 GAGAA-TATCCAGAAGAGCAAGATCTTCTTCATAGCATGGTCACCGGATTCATCTAGAGT 397
Query 314 GA-GAAGTAAGATGTTGTATGCAAGCTCAAAGGACAGGTTCAAGAGGGAATTGGATGGGA 372
| || | |||||| ||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 398 AAGGATG-AAGATGGTGTATGCGAGCTCAAAGGACAGGTTCAAGAGGGAATTGGATGGTA 456
Query 373 TTCAAGTTGAATTGCAAGCAACAGATCCTAGCGAGATGAGCCTCGACATCATCAA 427
|||| || || || ||||| || || || ||||||||||| ||||||||||||||
Sbjct 457 TTCAGGTGGAGTTACAAGCCACTGACCCGAGCGAGATGAGTCTCGACATCATCAA 511
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26523629616
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5