BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg918795

Length=629
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G01640.1 | Symbols:  | BTB/POZ domain-containing protein | c...   797    0.0  


> AT1G01640.1 | Symbols:  | BTB/POZ domain-containing protein | 
chr1:230994-232508 REVERSE LENGTH=918
Length=918

 Score =  797 bits (431),  Expect = 0.0
 Identities = 479/501 (96%), Gaps = 8/501 (2%)
 Strand=Plus/Plus

Query  129  TTCAGGAACATGTTAGATTCTGATGAATGCAAGACCTCCTCCGAGGAATCAATCACTCTC  188
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  275  TTCAGGAACATGTTAGATTCTGATGAATGCAAGACCTCCCCCGAGGAATCAATCACTCTC  334

Query  189  CCTGATTTGTCCCACGACGAACTCAAATCTCTTCTCGAGTTCCTCTACACCGGTAACTTA  248
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct  335  CCTGATTTGTCCCACGACGAACTCAAATCTCTTCTCGAGTTCCTCTACAGCGGTAACCTA  394

Query  249  AAAGCTCCATACAATCAATACCGATCCCTATATCTGGCTGCAGATAAGTACGACATTTCA  308
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  395  AAAGCTCCATACAATCAATACCGATCCCTATATCTGGCTGCAGATAAGTACGACATTTCA  454

Query  309  TATCTGCAAGACGTATGCCGTAACCATTTCATTGCATCTCTGAGCTCTAGGAACGTCCTA  368
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  455  TATCTGCAAGACGTATGCCGTAACCATTTCATCGCATCTCTGAGCTCTAGGAACGTCCTA  514

Query  369  GACATCTTAGAGCTCGCCAGTATACCTTGTGACACAATCTTGAAAGACGCGGCTATCAAT  428
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  515  GACATCTTAGAGCTCGCCAGTATACCTTGTGACACAATCTTGAAAGACGCGGCTATCAAT  574

Query  429  CATATTGTCAAACACATGGAAGAAGTGGTTGTTCCCATCAAGTATGAGACGTTTGTGCAG  488
            |||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||
Sbjct  575  CATATTGTCAAACATATGGAAGAAGTGGTTGTTCCCATGAAATATGAGACGTTTGTGCAG  634

Query  489  AGGAACCCGGATCTAAGCGTGGAGATCACTCGCGCTTATCTAAGAGAGACCAAAGCCAAA  548
            |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct  635  AGGAACCCGGATCTAAGCGTGGAGATCACTCGGGCTTATCTGAGAGAGACCAAAGCCAAA  694

Query  549  GCCAAAGATCATGGAGCTCCTCCATTCAATGGTTTTACTAGCTCACACGTCAACTGGTGA  608
            |||||||||||||||||||||| |   ||||||  |||| || | |||| || |||||||
Sbjct  695  GCCAAAGATCATGGAGCTCCTCTA---AATGGTAATACTCGC-C-CACG-CATCTGGTGA  748

Query  609  ACAAAAACAGCTTGTGTAAGT  629
            |||||  ||||||||||||||
Sbjct  749  ACAAA--CAGCTTGTGTAAGT  767



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30341424788


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5