BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918803
Length=1469
Score E
Sequences producing significant alignments: (Bits) Value
AT4G00300.1 | Symbols: | fringe-related protein | chr4:126509-... 604 6e-172
> AT4G00300.1 | Symbols: | fringe-related protein | chr4:126509-130331
FORWARD LENGTH=2563
Length=2563
Score = 604 bits (327), Expect = 6e-172
Identities = 719/898 (80%), Gaps = 67/898 (7%)
Strand=Plus/Plus
Query 498 GTTGTTAGGTTTGTTCCTAGTAAAGATTCGAAATTAGCATTCGTTAATGCTATTGAAGTT 557
||| |||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1405 GTTATTAGGTTTGTTCCTAGTAAAGATTCGAACTTTGCATTCGTTAATGCTATTGAAGTT 1464
Query 558 ATCTCTGCACCTAAGGATTTGATTGCAGACGTAGCAACCTCTGTATC-CAATGATGGAAC 616
|||||||| |||||||||||||||| ||||| |||||||||||||| || |||||| ||
Sbjct 1465 ATCTCTGCGCCTAAGGATTTGATTGGTGACGTTGCAACCTCTGTATCTCA-TGATGGGAC 1523
Query 617 AACTGAGAAACTCAATGGTTTAGTTAAACAAGCAATGGAAGTTGTTTACAGAATCAATGT 676
||||||| |||||||||||| ||||||||||||||| ||||| || ||| |||||||
Sbjct 1524 ---TGAGAAATTCAATGGTTTAGCTAAACAAGCAATGGAGGTTGTGTATAGAGTCAATGT 1580
Query 677 TGGTGGAAGAACAGTGACTCCTTTTAACGACACATTGTGGAGAACTTGGGTTCCTGATGA 736
|||||| |||| ||| ||||||||||| |||||||||||||| ||||||||| |||||||
Sbjct 1581 TGGTGGTAGAAAAGTTACTCCTTTTAATGACACATTGTGGAGGACTTGGGTTACTGATGA 1640
Query 737 GAG-ATTCTTCAAAGTCAGTGATGG-T--TCTGAGAAA-GTTTACTTCTCTGGTAGGATT 791
|| |||||| ||| | ||||||| | ||||||||| ||| ||||| | || ||||||
Sbjct 1641 -AGGATTCTTGAAAACCGGTGATGGGTCGTCTGAGAAAAGTT-ACTTCACCGGGAGGATT 1698
Query 792 AAGTATAGGCTTGGAGGGGCAAGTCGTGAAGTTGGCCCTGATAACCTCTATAACACTGCC 851
|||||||||| ||||||||| |||||||||||||| |||||||| | || ||||||||
Sbjct 1699 AAGTATAGGCGTGGAGGGGCGAGTCGTGAAGTTGGTCCTGATAATGTTTACAACACTGCT 1758
Query 852 CGTGT-GGTGAAGAGCAA-CAATGGCTCCGTTTCTCAGGTTAATATGACATGGGAGTTTC 909
||||| ||| || || || |||||| | | |||| |||||| |||| |||||
Sbjct 1759 CGTGTTGGTAAA-AG-AAGCAATGGAT---T------GGTTGATATGAGTTGGG-GTTTC 1806
Query 910 CAG-TGAGCAGTGGCT-ATAAGTATCTAATCAGGTTGCATTTCTGCGATATAGCTAGTAT 967
|| ||| |||| | | |||||||| ||| || |||||||||| || |||||||| |
Sbjct 1807 AAGGTGAAT-GTGGGTTACAAGTATCTCATCCGGATGCATTTCTGTGACATAGCTAGCAA 1865
Query 968 GTCGCTTGGTATGCTATACTTCAACATCTACATCAACGGGAATTTGGCGTATCAAGATTT 1027
|| || || | ||| || ||||| ||||||| |||||||| ||||||||| |||||||
Sbjct 1866 ATCTCTCGGCAGGCTTTATTTCAATGTCTACATTAACGGGAACTTGGCGTATGAAGATTT 1925
Query 1028 AGATATCTCAGATG-TCACTGATTACGTC-TTGGCTTCCCCGTATTACATAGATTTTGTG 1085
||||||||| | | | | ||| | ||| ||| |||| ||||||||||| ||||| |||
Sbjct 1926 CGATATCTCATACGCTG-CGGATAATGTCCTTG-CTTCTCCGTATTACATTGATTTCGTG 1983
Query 1086 GTGGATG-----G-TGA-GA-A-CT-CTTCTTCGGGTT--T-GATAAGC-TTAAGTGTTG 1131
||||||| | ||| || | | | |||| || | | ||||| | ||| ||||||
Sbjct 1984 GTGGATGCTACTGCTGATGACAACAACC-CTTCAGGATCGTCGATAACCGTTA-GTGTTG 2041
Query 1132 GACCATCGAACAAGAGTA-T-T-GA---ACACGCTGTTGATGCGATCTTGAACGGAGTCG 1185
||||||| ||||||| || | | || | | | || |||||||| |||||||| || |
Sbjct 2042 GACCATCAAACAAGACTAGTGTTGATGGAAATGGAGTGGATGCGATATTGAACGGTGTTG 2101
Query 1186 AGATCATGAAGATGAATAACAC-ATTGGGAAGTCTTGATGGGTCTGTTTCCACGGAAATG 1244
|||||||||||||||||||| | || ||| ||||||||||||| |||||| || || |||
Sbjct 2102 AGATCATGAAGATGAATAACTCGAT-GGGTAGTCTTGATGGGTATGTTTCAACAGAGATG 2160
Query 1245 ATACTTAGC-CGTTGTCCCAAC-AGAAGAAACCTTAGCTTGTTTAT-GTCAATGGTGGC- 1300
|| || || | ||| ||||| || |||||||| ||| | ||||| | ||||| ||||
Sbjct 2161 ATTCTGAGTAC-TTG-CCCAAATAGGAGAAACCTGAGCATATTTATCG-CAATGTTGGCG 2217
Query 1301 TTTCATGTGTATCTTGATGAGTGTT-TACATTGTAACTCAAAGGAGGAAAGCTAAGGA 1357
||| |||||||| || ||||| || |||||||| |||||||| | || || ||||||
Sbjct 2218 TTT-ATGTGTATATTTATGAGC-TTCTACATTGTGACTCAAAGAAAGAGAGTTAAGGA 2273
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72439386435
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5