BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg918814

Length=578
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G01490.1 | Symbols:  | Heavy metal transport/detoxification ...   911    0.0  


> AT1G01490.1 | Symbols:  | Heavy metal transport/detoxification 
superfamily protein  | chr1:180120-182358 REVERSE LENGTH=1107
Length=1107

 Score =  911 bits (493),  Expect = 0.0
 Identities = 547/574 (95%), Gaps = 0/574 (0%)
 Strand=Plus/Plus

Query  5    TAAAAAACAGAGAGCAATGAAGAAAATTGTGTTAAAGCTGGATTTGCATGATGATAAGGC  64
            |||||| | |||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct  277  TAAAAAGCTGAGAGCAATGAAGAAAATTGTGTTAAAGCTGGATTTGCATGACGATAGGGC  336

Query  65   AAAACAAAAGGCCCTCAAAACTGTTTCTACTCTCCCAGGAATCGACTCCATTGCAATGGA  124
            ||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct  337  AAAACAAAAGGCCCTTAAAACGGTTTCTACTCTCCCAGGAATCGATTCCATTGCAATGGA  396

Query  125  CATGAAGGAGAAGAAATTAACGGTGATTGGAACTGTAGATCCGGTAAATGTAGTAAGTAA  184
            |||||||||||||||||| ||||| |||||||| || |||||||||||||||||||||||
Sbjct  397  CATGAAGGAGAAGAAATTGACGGTTATTGGAACCGTGGATCCGGTAAATGTAGTAAGTAA  456

Query  185  GCTAAGAAAGTATTGGCCGATGACGGATATCATACTAGTGGGACCTGCTAaagaaccgga  244
            ||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||
Sbjct  457  GCTAAGAAAGTATTGGCCGATGACGGATATCGTACTAGTGGGACCTGCGAAAGAGCCGGA  516

Query  245  aaaggagaagaaggaagagccgaagaaggaaggtggtggcgagccgccgaagaaagaagg  304
            ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct  517  AAAGGAGAAGAAGGAGGAGCCGAAGAAGGAAGGTGGTGGCGAGCCGCCAAAGAAAGAAGG  576

Query  305  ggaagctccaaaagaagaagggaaaaaggaaggagaagcgccgaagaaggaagaagagaa  364
             |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  577  AGAAGCTCCAAAAGAAGAAGGGAAAAAGGAAGGAGAAGCACCGAAGAAGGAAGAAGAGAA  636

Query  365  gaaagaaggtggtgataaaaaggaaggagagaagaaagaTCAACCACAACCGCAGCCGCA  424
            |||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct  637  GAAAGAAGGTGGCGATAAGAAGGAAGGAGAGAAGAAAGATCAACCACAAGCGCAGCCGCA  696

Query  425  ACCAGTTGTGCCGCCACCGGATCATGTGTTGGAACTTGTAAAGGCGTATAAAGCATATAA  484
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  697  ACCAGTTGTGCCGCCACCTGATCATGTGTTGGAACTTGTAAAGGCGTATAAAGCATATAA  756

Query  485  TCCTCACCTAACAACGTATTACTACGCCCAAAGCATCGAAGAAAACCCTAATGCTTGCGT  544
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  757  TCCTCACCTAACAACGTATTACTACGCCCAAAGCATCGAAGAAAACCCTAATGCTTGCGT  816

Query  545  TATATGTTGAAAAATCTATAACATAATATATTTT  578
            |||||||||||| || |||||  | |||||||||
Sbjct  817  TATATGTTGAAATATTTATAATGTGATATATTTT  850



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27779483291


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5