BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918815
Length=1532
Score E
Sequences producing significant alignments: (Bits) Value
AT1G01480.1 | Symbols: ACS2, AT-ACC2 | 1-amino-cyclopropane-1-c... 2425 0.0
> AT1G01480.1 | Symbols: ACS2, AT-ACC2 | 1-amino-cyclopropane-1-carboxylate
synthase 2 | chr1:175782-178400 FORWARD LENGTH=1920
Length=1920
Score = 2425 bits (1313), Expect = 0.0
Identities = 1462/1535 (95%), Gaps = 5/1535 (0%)
Strand=Plus/Plus
Query 1 AGTGGGAATTAAAACAGCAAATGGGTCTTCCGGCAAAAAATAAAGGTGCGA-TTTTGTCG 59
|||| ||||| | |||||||||||||||||||| ||||||||||||||| | ||||||||
Sbjct 61 AGTGAGAATTGACACAGCAAATGGGTCTTCCGGGAAAAAATAAAGGTGC-AGTTTTGTCG 119
Query 60 AAGATAGCGACTAACGATCAACATGGAGAGAACTCAGAGTATTTTGATGGATGGAAAGCT 119
||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 120 AAGATAGCGACTAACAATCAACACGGAGAGAACTCAGAGTACTTTGATGGATGGAAAGCT 179
Query 120 TACGACAAAGATCCTTTCCATCTTTCCCGTAACCCTCATGGGATTATCCAAATGGGTCTT 179
||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||
Sbjct 180 TACGACAAAGATCCTTTTCATCTTTCCCGTAACCCCCATGGGATCATCCAAATGGGTCTT 239
Query 180 GCAGAGAATCAGCTTTGCTTAGATTTGATCAAAGATTGGGTCATGGAGAATCCAGAAGCT 239
||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 240 GCAGAGAATCAGCTTTGCTTAGATTTGATCAAAGATTGGGTCAAAGAGAACCCAGAAGCT 299
Query 240 TCTATTTGCACCCTTGAAGGTGTTCATCAGTTTAGCGACATCGCTAATTTCCAAGACTAC 299
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 300 TCTATTTGCACCCTTGAAGGTATTCATCAGTTTAGCGACATCGCTAATTTCCAAGACTAC 359
Query 300 CATGGTCTTAAGAAGTTTAGACAGGCAATTGCACATTTCATGGGAAAAGCTAGAGGTGGA 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CATGGTCTTAAGAAGTTTAGACAGGCAATTGCACATTTCATGGGAAAAGCTAGAGGTGGA 419
Query 360 AGAGTGACATTTGATCCGGAGAGGGAGGTTATGAGCGGCGGCGCCACCGGAGCCAATGAA 419
|||||||| |||||||||||||||| |||||||||||| || ||||||||||||||||||
Sbjct 420 AGAGTGACTTTTGATCCGGAGAGGGTGGTTATGAGCGGAGGAGCCACCGGAGCCAATGAA 479
Query 420 ACAATTATGTTCTGCCTTGCCGATCCCGGCGACGTTTTCCTCATTCCCTCTCCTTATTAT 479
||||| |||||||||||||| ||||||||||||||||||||||||||||| || || |||
Sbjct 480 ACAATCATGTTCTGCCTTGCGGATCCCGGCGACGTTTTCCTCATTCCCTCCCCGTACTAT 539
Query 480 GCTGCATTTGATAGAGACTTGAGGTGGCGTACAGGTGTCGAGATAATCCCGGTTCCTTGT 539
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 540 GCCGCATTTGATAGAGACTTGAGGTGGCGGACAGGTGTCGAGATAATCCCGGTTCCTTGT 599
Query 540 TCAAGCTCCAACAATTTCAAATTAACCGTTGAGGCCGTGGACTGGGCTTATAAAAAGGCC 599
||||||||| |||||||||||||||||||||| |||| ||| |||||||||||||| |||
Sbjct 600 TCAAGCTCCGACAATTTCAAATTAACCGTTGACGCCGCGGAATGGGCTTATAAAAAAGCC 659
Query 600 CAAGAGTCCAATAAAAAAGTCAAAGGTCTGATTTTGACCAACCCATCAAATCCACTCGGT 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 CAAGAGTCCAATAAAAAAGTCAAAGGTCTGATTTTGACCAACCCATCAAATCCACTCGGT 719
Query 660 ACGATGTTGGATAAGGACACACTCACGAACTTAGTCCGGTTCGTCACGAGGAAGAACATT 719
|| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 720 ACAATGTTGGATAAGGACACACTCACGAACTTGGTCCGGTTTGTCACGAGGAAGAACATT 779
Query 720 CACCTAGTCGTCGACGAGATCTATGCCGCCACAGTCTTCGCCGGAGGAGATTTTGTAAGC 779
||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||
Sbjct 780 CACCTAGTCGTCGACGAGATCTACGCCGCCACAGTCTTCGCCGGAGGAGATTTCGTGAGC 839
Query 780 GTTGCTGAGGTGGTCAACGATGTGGACATCTCTGAAGTCAACGTTGACTTGATTCACATT 839
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 840 GTTGCTGAGGTGGTCAATGATGTGGACATCTCCGAAGTCAACGTTGACTTGATTCACATT 899
Query 840 GTCTATAGTCTTTCTAAAGACATGGGACTTCCTGGTTTTAGAGTCGGGATAGTCTATTCT 899
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 900 GTCTATAGTCTTTCTAAAGATATGGGACTTCCTGGTTTTAGAGTCGGGATAGTCTATTCT 959
Query 900 TACAATGACTCGGTCGTCTCTTGCGCAAGAAAAATGTCGAGTTTCGGACTTGTTTCGTCT 959
| ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 960 TTCAATGACTCGGTCGTGTCTTGCGCAAGAAAAATGTCAAGTTTCGGACTTGTTTCGTCT 1019
Query 960 CAGACACAACTCATGCTTGCTTCGATGTTGTCAGATGATCGGTTTGTAGAAAATTTTCTT 1019
|||||||||||||||||||||||||||||||| ||||||| |||||| || ||||||||
Sbjct 1020 CAGACACAACTCATGCTTGCTTCGATGTTGTCCGATGATCAGTTTGTGGATAATTTTCTA 1079
Query 1020 ATGGAAAGCTCGAGAAGGTTAGGGATAAGGCATAAAGTTTTTACCACAGG-ACTCAAGAA 1078
|||||||||||||||||||| |||||||||||||||||||||||||| || | |||||||
Sbjct 1080 ATGGAAAGCTCGAGAAGGTTGGGGATAAGGCATAAAGTTTTTACCACGGGGA-TCAAGAA 1138
Query 1079 AGCAGATATTTCTTGTTTGACAAGCAACGCAGGTTTATTTGCGTGGATGGATTTGAGACA 1138
|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1139 AGCAGATATTGCTTGTTTGACAAGCAACGCTGGTTTATTTGCGTGGATGGATTTGAGACA 1198
Query 1139 TCTATTGAGAGATCGTAACTCGTTTGAATCTGAGATCGAGCTTTGGCATATAATCATCGA 1198
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 TCTACTGAGAGATCGTAACTCGTTTGAATCTGAGATCGAGCTTTGGCATATAATCATCGA 1258
Query 1199 TAAAGTTAAGCTCAATGTGTCTCCTGGCTCTTCCTTCCGTTGCACGGAACCTGGATGGTT 1258
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TAGAGTTAAGCTCAATGTGTCTCCTGGCTCTTCCTTCCGTTGCACGGAACCTGGATGGTT 1318
Query 1259 TAGGGTTTGCTTTGCCAACATGGACGATGATACTCTCCACGTGGCGCTTGGACGAATCCA 1318
|||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1319 TAGGATTTGCTTTGCCAACATGGACGATGATACTCTCCATGTGGCGCTTGGACGGATCCA 1378
Query 1319 AGATTTCGTGTCTAAGAACAACAACAAGATCGTTGAGAAAGCATCTGAAAATGATCAGGT 1378
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1379 AGATTTCGTGTCTAAGAACAAGAACAAGATCGTCGAGAAAGCATCTGAAAATGATCAGGT 1438
Query 1379 AATCCAGAACAACAATGCTAAAAAGCAGAATTGGAGGCAGAGCAATCTCCGACTAAGTTT 1438
|||||||||||| | ||||||||||| ||| |||| ||||| |||||| |||||||||||
Sbjct 1439 AATCCAGAACAAGAGTGCTAAAAAGCTGAAATGGACGCAGACCAATCTTCGACTAAGTTT 1498
Query 1439 CCGTCGACTTTACGAGGATGGTCTCTCGTCGCCAGGGATAATGTCACCACACTCACCTCT 1498
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1499 CCGACGACTTTACGAGGATGGTCTCTCGTCTCCAGGGATAATGTCACCACACTCACCTCT 1558
Query 1499 TCTCCGAGCATGAAA-TCTTAAGGCATAACGCCTG 1532
||||||||||||||| ||||||||||||||| |||
Sbjct 1559 TCTCCGAGCATGAAAATCTTAAGGCATAACGTCTG 1593
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75602020770
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5